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The map label for this gene is 150400494

Identifier: 150400494

GI number: 150400494

Start: 63599

End: 63922

Strand: Reverse

Name: 150400494

Synonym: Maeo_0056

Alternate gene names: NA

Gene position: 63922-63599 (Counterclockwise)

Preceding gene: 150400495

Following gene: 150400493

Centisome position: 4.07

GC content: 29.01

Gene sequence:

>324_bases
ATGATTGGAAATGAGTTAATATCTCAAAAATACATTACACTATCAAGTGCAGAAGAACTTATGTCTAATAAATCAAGTGA
TGATGAATTATCCTATGAAAATGGATGTGCATTAGATTATCTTCAAAGATTTGCAAAACTAAATGCCGAAGATGTAGAAA
AGCTCACTGAGGAGTTAAAAAAGCTTGAATTGGACGAAAAAACCATAGTAAAGATAATAGACATACTCCCAGAAGATAAC
GAAGATTTAAAATTAATATTCTATAAATCCGATATTCCAAAATGCTCGGAAGATATATTGGATTTATGTGCTAAATTTAG
ATAA

Upstream 100 bases:

>100_bases
AACAATTATTAATTTAACATTAAATTAATTAGATTGACATATTGTTTATTTTAATTATCGCTATATTATTTTAACTATAT
TTTTATTTTAGGATGAAATT

Downstream 100 bases:

>100_bases
TATTATTGAATATGATTAAATACCATAATTACATACTATTTTTTTATTATATTTTTACAATTTACAATTATATTGTGTTC
AAAAAAGTCAAATTCTAAAG

Product: RNA polymerase Rpb4

Products: diphosphate; RNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MIGNELISQKYITLSSAEELMSNKSSDDELSYENGCALDYLQRFAKLNAEDVEKLTEELKKLELDEKTIVKIIDILPEDN
EDLKLIFYKSDIPKCSEDILDLCAKFR

Sequences:

>Translated_107_residues
MIGNELISQKYITLSSAEELMSNKSSDDELSYENGCALDYLQRFAKLNAEDVEKLTEELKKLELDEKTIVKIIDILPEDN
EDLKLIFYKSDIPKCSEDILDLCAKFR
>Mature_107_residues
MIGNELISQKYITLSSAEELMSNKSSDDELSYENGCALDYLQRFAKLNAEDVEKLTEELKKLELDEKTIVKIIDILPEDN
EDLKLIFYKSDIPKCSEDILDLCAKFR

Specific function: Unknown

COG id: COG1460

COG function: function code S; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010997
- InterPro:   IPR015906
- InterPro:   IPR015907
- InterPro:   IPR005574 [H]

Pfam domain/function: PF03874 RNA_pol_Rpb4 [H]

EC number: 2.7.7.6

Molecular weight: Translated: 12326; Mature: 12326

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGNELISQKYITLSSAEELMSNKSSDDELSYENGCALDYLQRFAKLNAEDVEKLTEELK
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
KLELDEKTIVKIIDILPEDNEDLKLIFYKSDIPKCSEDILDLCAKFR
HCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MIGNELISQKYITLSSAEELMSNKSSDDELSYENGCALDYLQRFAKLNAEDVEKLTEELK
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
KLELDEKTIVKIIDILPEDNEDLKLIFYKSDIPKCSEDILDLCAKFR
HCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: nucleoside triphosphate; RNAn

Specific reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]