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The map label for this gene is 150400223

Identifier: 150400223

GI number: 150400223

Start: 1507646

End: 1508167

Strand: Reverse

Name: 150400223

Synonym: Mevan_1484

Alternate gene names: NA

Gene position: 1508167-1507646 (Counterclockwise)

Preceding gene: 150400224

Following gene: 150400220

Centisome position: 87.68

GC content: 24.71

Gene sequence:

>522_bases
ATGCGGTGTTTTTTAGCATTTGAACTTCCAAATGAGTTAAAAGAAAAGTTAAACGGTTTAAAAAGTAATTTCAATTTTAA
AGGTATAAAACTCGTTGAAACTGAAAATTTACATATAACTGTTAAATTTTTAGGAGATATTGACGATAAAACCCTTGAAA
AGGTAATTAATTCAGATTTAAGCATTAATAAAGTTTTTTCAGAAATAAAAGGAATTGGGACTTTTCCAAATAGTGAATAT
GTAAAAGTTATATGGGTTGGTTCAACAAATCTTCAAAAAACCATGAGTAATATTGATAACAAGCTTTTTAATTTAGGTTT
TAAAAAGGAGAAAACTTATGAACCGCATATCACTATTGGAAGAGTTAAATATCTTGAAAATGATTTAAAAGAAAATTTAA
GAGAAATAATTAATAAAAATAGTTACGTTGATTTTGGAAAAATTGAAATAAACTCTATTTCATTAATGAAAAGCATTTTA
ACGCCTAATGGGCCAAAATATGAAGTTATAAAAAAATGGTAG

Upstream 100 bases:

>100_bases
ATTTTGAAATAGGGATTAAAAAAATTACCTGTAAGGTATGTAAAAAAAATTATAAAGTTGAAAATAACATTTTGGTATTT
TTAGAAGAATAGGGAAAATT

Downstream 100 bases:

>100_bases
CTGAAAATTTAGGGCTTAATGTATTCATAATTATAAAGTATACCCTCGTGTGCAGTTACTATATGCTTTTTTAAGCTTTT
TATTTTTAAAATTGATTTTC

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MRCFLAFELPNELKEKLNGLKSNFNFKGIKLVETENLHITVKFLGDIDDKTLEKVINSDLSINKVFSEIKGIGTFPNSEY
VKVIWVGSTNLQKTMSNIDNKLFNLGFKKEKTYEPHITIGRVKYLENDLKENLREIINKNSYVDFGKIEINSISLMKSIL
TPNGPKYEVIKKW

Sequences:

>Translated_173_residues
MRCFLAFELPNELKEKLNGLKSNFNFKGIKLVETENLHITVKFLGDIDDKTLEKVINSDLSINKVFSEIKGIGTFPNSEY
VKVIWVGSTNLQKTMSNIDNKLFNLGFKKEKTYEPHITIGRVKYLENDLKENLREIINKNSYVDFGKIEINSISLMKSIL
TPNGPKYEVIKKW
>Mature_173_residues
MRCFLAFELPNELKEKLNGLKSNFNFKGIKLVETENLHITVKFLGDIDDKTLEKVINSDLSINKVFSEIKGIGTFPNSEY
VKVIWVGSTNLQKTMSNIDNKLFNLGFKKEKTYEPHITIGRVKYLENDLKENLREIINKNSYVDFGKIEINSISLMKSIL
TPNGPKYEVIKKW

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 19978; Mature: 19978

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCFLAFELPNELKEKLNGLKSNFNFKGIKLVETENLHITVKFLGDIDDKTLEKVINSDL
CEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEEEECCCCHHHHHHHHCCCC
SINKVFSEIKGIGTFPNSEYVKVIWVGSTNLQKTMSNIDNKLFNLGFKKEKTYEPHITIG
CHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEH
RVKYLENDLKENLREIINKNSYVDFGKIEINSISLMKSILTPNGPKYEVIKKW
HHHHHHHHHHHHHHHHHCCCCCCEECEEEEHHHHHHHHHHCCCCCCEEEEECC
>Mature Secondary Structure
MRCFLAFELPNELKEKLNGLKSNFNFKGIKLVETENLHITVKFLGDIDDKTLEKVINSDL
CEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEEEECCCCHHHHHHHHCCCC
SINKVFSEIKGIGTFPNSEYVKVIWVGSTNLQKTMSNIDNKLFNLGFKKEKTYEPHITIG
CHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEH
RVKYLENDLKENLREIINKNSYVDFGKIEINSISLMKSILTPNGPKYEVIKKW
HHHHHHHHHHHHHHHHHCCCCCCEECEEEEHHHHHHHHHHCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]