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The map label for this gene is 150399756

Identifier: 150399756

GI number: 150399756

Start: 1023323

End: 1023481

Strand: Reverse

Name: 150399756

Synonym: Mevan_1008

Alternate gene names: NA

Gene position: 1023481-1023323 (Counterclockwise)

Preceding gene: 150399757

Following gene: 150399755

Centisome position: 59.5

GC content: 32.7

Gene sequence:

>159_bases
ATGCAGATGAAAAAATGTCCAAAATGTGGCAAATATACTTTAAAAGAGTACTGTATTGACTGTAATGAAAAAGCAGGTAC
TGTCAAACCTCCAAGGTTTTCCCCGGTAGATAAATATGGAAAATACCGGAGAATGCTCAAAAAATCTTTAAAAAAATAG

Upstream 100 bases:

>100_bases
AAGAAGTTTTAAGAAGAGTTGCAGAAGAAGCAATTGAGTATATTAAAGACTACAAGGGCGGACAGGGTAGTTTTGTTAGG
GTAGAGGAGTAATCGATACC

Downstream 100 bases:

>100_bases
ATGGATAAAATGGAATTACGATATAATTCAGGGAATATTTTAAACGAAGAAGTCCATAAAATTGGCATTATTGCACTTGG
ATCTTTTCTTGAAAATCATG

Product: H/ACA RNA-protein complex component Nop10p

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 52; Mature: 52

Protein sequence:

>52_residues
MQMKKCPKCGKYTLKEYCIDCNEKAGTVKPPRFSPVDKYGKYRRMLKKSLKK

Sequences:

>Translated_52_residues
MQMKKCPKCGKYTLKEYCIDCNEKAGTVKPPRFSPVDKYGKYRRMLKKSLKK
>Mature_52_residues
MQMKKCPKCGKYTLKEYCIDCNEKAGTVKPPRFSPVDKYGKYRRMLKKSLKK

Specific function: Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA

COG id: COG2260

COG function: function code J; Predicted Zn-ribbon RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NOP10 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NOP10_METVS (A6UQY9)

Other databases:

- EMBL:   CP000742
- RefSeq:   YP_001323523.1
- ProteinModelPortal:   A6UQY9
- SMR:   A6UQY9
- STRING:   A6UQY9
- GeneID:   5325643
- GenomeReviews:   CP000742_GR
- KEGG:   mvn:Mevan_1008
- eggNOG:   arNOG14058
- HOGENOM:   HBG498094
- OMA:   KYGKYRR
- ProtClustDB:   PRK13130
- HAMAP:   MF_00803
- InterPro:   IPR007264

Pfam domain/function: PF04135 Nop10p

EC number: NA

Molecular weight: Translated: 6148; Mature: 6148

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.7 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
13.5 %Cys+Met (Translated Protein)
7.7 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
13.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQMKKCPKCGKYTLKEYCIDCNEKAGTVKPPRFSPVDKYGKYRRMLKKSLKK
CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQMKKCPKCGKYTLKEYCIDCNEKAGTVKPPRFSPVDKYGKYRRMLKKSLKK
CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA