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The map label for this gene is ybaK [H]

Identifier: 150398693

GI number: 150398693

Start: 3712206

End: 3712679

Strand: Reverse

Name: ybaK [H]

Synonym: Smed_3507

Alternate gene names: 150398693

Gene position: 3712679-3712206 (Counterclockwise)

Preceding gene: 150398694

Following gene: 150398691

Centisome position: 98.17

GC content: 64.35

Gene sequence:

>474_bases
ATGTCGAAGACGACCCGGGCAACGCAGGCACTCGCAAAGGCCGGCATTGCCTTTACCGTTCACAGCTATGACTACGATCC
CGATGCCGAACGCGTCGGGCTGCAGGCGGCGGAGGCGCTCGGCGAAGACCCATCTCGCGTCTTTAAGACTCTGATGGCCG
AGGTCGACGGCAAGCCGGTCTGCTGCATCGTGCCCTCCGATCGGGAGGTCAGCATGAAGAAGCTCGCCGCGGCCTTCAAC
GGGAAGTCGGCGAGCATGATGAAACCGGCAGACGCCGAGCGGCTGACCGGCTATCACGTCGGCGGCATCAGCCCCTTCGG
GCAGAGGAAGACCGTTCCGACCGCGATAGAGGAAGCGGCGCTCGCCGAAGGTCTGGTCTTCATCAATGGCGGGCAAAGAG
GTCTGCAGCTGCGGCTGACGCCGAAGGACGCGCAAGCCGCCTTGAGGGCGATTGCAGCCCCTCTGATCGCCTGA

Upstream 100 bases:

>100_bases
GCAGCCGTCGATGATCAAGCGCCCGGTGCTCGATGCTGACGGCAGGCTGCTCGTCGGCTTCAAGCCGGAACTCTACGAAG
CCGCATTCGGGGCGTAAACC

Downstream 100 bases:

>100_bases
TTTCCTCCGGACCGGGATATCAACCGAGCTTTGAGAGCAGCGAGGCAAGCGCGCTTGCCTCTTCTTCGCTAAGCTTTGCG
CCGACATGCCGCGCGATCGA

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSKTTRATQALAKAGIAFTVHSYDYDPDAERVGLQAAEALGEDPSRVFKTLMAEVDGKPVCCIVPSDREVSMKKLAAAFN
GKSASMMKPADAERLTGYHVGGISPFGQRKTVPTAIEEAALAEGLVFINGGQRGLQLRLTPKDAQAALRAIAAPLIA

Sequences:

>Translated_157_residues
MSKTTRATQALAKAGIAFTVHSYDYDPDAERVGLQAAEALGEDPSRVFKTLMAEVDGKPVCCIVPSDREVSMKKLAAAFN
GKSASMMKPADAERLTGYHVGGISPFGQRKTVPTAIEEAALAEGLVFINGGQRGLQLRLTPKDAQAALRAIAAPLIA
>Mature_156_residues
SKTTRATQALAKAGIAFTVHSYDYDPDAERVGLQAAEALGEDPSRVFKTLMAEVDGKPVCCIVPSDREVSMKKLAAAFNG
KSASMMKPADAERLTGYHVGGISPFGQRKTVPTAIEEAALAEGLVFINGGQRGLQLRLTPKDAQAALRAIAAPLIA

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=149, Percent_Identity=36.9127516778523, Blast_Score=104, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 16543; Mature: 16412

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTTRATQALAKAGIAFTVHSYDYDPDAERVGLQAAEALGEDPSRVFKTLMAEVDGKPV
CCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCE
CCIVPSDREVSMKKLAAAFNGKSASMMKPADAERLTGYHVGGISPFGQRKTVPTAIEEAA
EEEECCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCEECCCCCCCCCCCCCHHHHHHHH
LAEGLVFINGGQRGLQLRLTPKDAQAALRAIAAPLIA
HHCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKTTRATQALAKAGIAFTVHSYDYDPDAERVGLQAAEALGEDPSRVFKTLMAEVDGKPV
CCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCE
CCIVPSDREVSMKKLAAAFNGKSASMMKPADAERLTGYHVGGISPFGQRKTVPTAIEEAA
EEEECCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCEECCCCCCCCCCCCCHHHHHHHH
LAEGLVFINGGQRGLQLRLTPKDAQAALRAIAAPLIA
HHCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]