Click here to switch to the map view.

The map label for this gene is yciF [H]

Identifier: 150398677

GI number: 150398677

Start: 3698834

End: 3699325

Strand: Reverse

Name: yciF [H]

Synonym: Smed_3491

Alternate gene names: 150398677

Gene position: 3699325-3698834 (Counterclockwise)

Preceding gene: 150398680

Following gene: 150398675

Centisome position: 97.82

GC content: 59.35

Gene sequence:

>492_bases
ATGGCAAAAGAAAAGACACTGGAAGACCTGTTCCACGACACGCTCAAGGACATGTACTATGCCGAGCGGAAGATCCTTAA
AGCTCTGCCGAAAATGGCGCGGGCGGCGCAGGCCCCGGAGCTGAAGGCGGCGTTCGAGAAGCATAAGGAACAGACCGAGA
CACATGTCGAACGGCTGCAGCAGGTCTTCGAACTGATCGGCAAGCGCGCCCAGGGTAAGACCTGCGACGCGATCGAGGGC
ATCGTCGCCGAGGGCGAAGAAATCATGGAGGAATTCAAAGGCACGCCCGCGCTGGATGCCGGACTCATCTCCTCCGCCCA
GGCGGTAGAGCATTATGAGATCTCACGTTACGGCACCCTGAAGACCTGGGCAAAGACCATCGGCCTCAAGGACGCAGTGT
CGCTCCTCGACGCAACGCTGAAGGAGGAAGTCGTCACGGACGAGGACCTGACGAAAATCGCGACGGCGCAGGCGAACAAA
AAGGCCGCGTGA

Upstream 100 bases:

>100_bases
CGTCAGACGCGCTTTTTGCACTCGCGAGGAACAAATCTTCGCCGTTTGCTGTTGTTTGCGGGTCGAAGGCAACACGATTT
AGACGAGGAAGGAAACGATA

Downstream 100 bases:

>100_bases
TATTCGCGGGCAGCCGGCGAAAGCGCCGGCTGCCGCTTTCCTGACTAGCCGCTTTGCCGGAAGAAATCGATGAACGCCCG
AAGCGCCGGGCGCATCAGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MAKEKTLEDLFHDTLKDMYYAERKILKALPKMARAAQAPELKAAFEKHKEQTETHVERLQQVFELIGKRAQGKTCDAIEG
IVAEGEEIMEEFKGTPALDAGLISSAQAVEHYEISRYGTLKTWAKTIGLKDAVSLLDATLKEEVVTDEDLTKIATAQANK
KAA

Sequences:

>Translated_163_residues
MAKEKTLEDLFHDTLKDMYYAERKILKALPKMARAAQAPELKAAFEKHKEQTETHVERLQQVFELIGKRAQGKTCDAIEG
IVAEGEEIMEEFKGTPALDAGLISSAQAVEHYEISRYGTLKTWAKTIGLKDAVSLLDATLKEEVVTDEDLTKIATAQANK
KAA
>Mature_162_residues
AKEKTLEDLFHDTLKDMYYAERKILKALPKMARAAQAPELKAAFEKHKEQTETHVERLQQVFELIGKRAQGKTCDAIEGI
VAEGEEIMEEFKGTPALDAGLISSAQAVEHYEISRYGTLKTWAKTIGLKDAVSLLDATLKEEVVTDEDLTKIATAQANKK
AA

Specific function: Unknown

COG id: COG3685

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787512, Length=162, Percent_Identity=44.4444444444444, Blast_Score=124, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010287
- InterPro:   IPR012347
- InterPro:   IPR009078 [H]

Pfam domain/function: PF05974 DUF892 [H]

EC number: NA

Molecular weight: Translated: 18107; Mature: 17976

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEKTLEDLFHDTLKDMYYAERKILKALPKMARAAQAPELKAAFEKHKEQTETHVERLQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
QVFELIGKRAQGKTCDAIEGIVAEGEEIMEEFKGTPALDAGLISSAQAVEHYEISRYGTL
HHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KTWAKTIGLKDAVSLLDATLKEEVVTDEDLTKIATAQANKKAA
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AKEKTLEDLFHDTLKDMYYAERKILKALPKMARAAQAPELKAAFEKHKEQTETHVERLQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
QVFELIGKRAQGKTCDAIEGIVAEGEEIMEEFKGTPALDAGLISSAQAVEHYEISRYGTL
HHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KTWAKTIGLKDAVSLLDATLKEEVVTDEDLTKIATAQANKKAA
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3058546; 9097039; 9278503; 8455549 [H]