| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
Click here to switch to the map view.
The map label for this gene is 150398667
Identifier: 150398667
GI number: 150398667
Start: 3688834
End: 3689454
Strand: Reverse
Name: 150398667
Synonym: Smed_3481
Alternate gene names: NA
Gene position: 3689454-3688834 (Counterclockwise)
Preceding gene: 150398668
Following gene: 150398663
Centisome position: 97.56
GC content: 62.16
Gene sequence:
>621_bases ATGTCGTCTTTGACCGGGGTTAAGGCAAGTTTCGCGGCCTTGTGCGCGCTTTTCATTTCAACGAACACGGCAATTCCCGC ACAGGCGGGAGCCACTCCCTGGATGCAGACCGGGGCGGTGACGTCGCAGCCGATCGGCCATTACGAGTTCTGTCAAAAGT ACAGGGGCGAATGCAGCGTCCGTTCGAAGTCGACGGTGGCGCCGCGCGTCACTGCGCGCGGCTGGGCCGCCATTCGCCAG GTCAATGCCTCGGTCAACCGGCAGATCGCGCCTGTAACCGATATCGAGCTTAACGGCCGGGACGAGGTTTGGTCCTATCC GAAGGCGCAGGGCGATTGCGAGGACTTCGCGCTGGAGAAGCGCAGACGCCTCATGCAGAAGGGCTTTTCCGCCGGCAACC TGCTGATGACCGTGGTGCGCAAGCCTGACGGCGAGGGTCATGCGGTACTCACCGTCCGCACGGCTCAAGGCGACTTCGTT CTCGACAATCTCGACAACAGCGTGAGATTGTGGACACACACGCCCTACCGCTTCCTCAAGCGCCAGGCCACGAACCATAG CGGTCGCTGGGTCACCATCGACAATGGCGGCGAAGTGCTCGTCGGCTCCGTCGGAAACTGA
Upstream 100 bases:
>100_bases AGAGCAGCGCAGGGGAAATTCCTAGAAAAGCTGTCGACAACTTTGGATTGCGCGAGTTGGTCCGGAAGGAACGGATGCGG CCGCGTTGCAGGGGATTTGT
Downstream 100 bases:
>100_bases CCCGCCGAACGATTTCCTCCTCAAAGGCCGCGAGATGCGGCCTTTTTTGTTGCGTGTCAGCGACCGCAAGCGGCAGCCCC GATCTTCCAATTTCCGTGCT
Product: transglutaminase family protein cysteine peptidase BTLCP
Products: NA
Alternate protein names: Transglutaminase-Like Cysteine Peptidase BTLCP; Transglutaminase Family Protein Cysteine Peptidase Btlcp; Periplasmic Protein-Like Protein; And 4.1 Domain Protein; Peptide Signal; Signal Peptide; Transglutaminase Cysteine Peptidase BTLCP; Transglutaminase-Like Cysteine Peptidase; Transglutaminase-Like Protein; Bacterial Transglutaminase-Like Cysteine Peptidase
Number of amino acids: Translated: 206; Mature: 205
Protein sequence:
>206_residues MSSLTGVKASFAALCALFISTNTAIPAQAGATPWMQTGAVTSQPIGHYEFCQKYRGECSVRSKSTVAPRVTARGWAAIRQ VNASVNRQIAPVTDIELNGRDEVWSYPKAQGDCEDFALEKRRRLMQKGFSAGNLLMTVVRKPDGEGHAVLTVRTAQGDFV LDNLDNSVRLWTHTPYRFLKRQATNHSGRWVTIDNGGEVLVGSVGN
Sequences:
>Translated_206_residues MSSLTGVKASFAALCALFISTNTAIPAQAGATPWMQTGAVTSQPIGHYEFCQKYRGECSVRSKSTVAPRVTARGWAAIRQ VNASVNRQIAPVTDIELNGRDEVWSYPKAQGDCEDFALEKRRRLMQKGFSAGNLLMTVVRKPDGEGHAVLTVRTAQGDFV LDNLDNSVRLWTHTPYRFLKRQATNHSGRWVTIDNGGEVLVGSVGN >Mature_205_residues SSLTGVKASFAALCALFISTNTAIPAQAGATPWMQTGAVTSQPIGHYEFCQKYRGECSVRSKSTVAPRVTARGWAAIRQV NASVNRQIAPVTDIELNGRDEVWSYPKAQGDCEDFALEKRRRLMQKGFSAGNLLMTVVRKPDGEGHAVLTVRTAQGDFVL DNLDNSVRLWTHTPYRFLKRQATNHSGRWVTIDNGGEVLVGSVGN
Specific function: Unknown
COG id: COG3672
COG function: function code S; Predicted periplasmic protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22527; Mature: 22396
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSLTGVKASFAALCALFISTNTAIPAQAGATPWMQTGAVTSQPIGHYEFCQKYRGECSV CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC RSKSTVAPRVTARGWAAIRQVNASVNRQIAPVTDIELNGRDEVWSYPKAQGDCEDFALEK CCCCCCCCCHHHHHHHHHHHHHHHHCCEECCEEEEEECCCHHHCCCCCCCCCHHHHHHHH RRRLMQKGFSAGNLLMTVVRKPDGEGHAVLTVRTAQGDFVLDNLDNSVRLWTHTPYRFLK HHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEEECCHHHHHH RQATNHSGRWVTIDNGGEVLVGSVGN HHCCCCCCCEEEECCCCCEEEECCCC >Mature Secondary Structure SSLTGVKASFAALCALFISTNTAIPAQAGATPWMQTGAVTSQPIGHYEFCQKYRGECSV CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC RSKSTVAPRVTARGWAAIRQVNASVNRQIAPVTDIELNGRDEVWSYPKAQGDCEDFALEK CCCCCCCCCHHHHHHHHHHHHHHHHCCEECCEEEEEECCCHHHCCCCCCCCCHHHHHHHH RRRLMQKGFSAGNLLMTVVRKPDGEGHAVLTVRTAQGDFVLDNLDNSVRLWTHTPYRFLK HHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEEECCHHHHHH RQATNHSGRWVTIDNGGEVLVGSVGN HHCCCCCCCEEEECCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA