Click here to switch to the map view.

The map label for this gene is yurN [H]

Identifier: 150398592

GI number: 150398592

Start: 3611080

End: 3612027

Strand: Reverse

Name: yurN [H]

Synonym: Smed_3403

Alternate gene names: 150398592

Gene position: 3612027-3611080 (Counterclockwise)

Preceding gene: 150398593

Following gene: 150398591

Centisome position: 95.51

GC content: 60.23

Gene sequence:

>948_bases
ATGAAACCACGCGAAAACCTGACCGACGTCAGCGAGATCAAGCGCCCGCGGCGCTGGCACATTCTCGTCTTCCTGTTGCC
GGCGCTCGTCGTCTACACGGCGGTGATGATCCTTCCGCTGGTCGAGACCCTGCGTCAGTCCTTGTACAACACGGTCGACG
GCCAGTTGACCTTCGTGGGCCTCGGCAATTTCAAGGTGCTCTTCGGCGATCCGCGCTGGGCTGCGGATTTCTGGAACGCG
CTCAAGAACAATTTCGTCTTCTTCCTGATCCACATGGCCGTGCAGAACCCGATCGGCATCGCTCTCGCCGCCATGCTGTC
CGTTCCGAAGCTGCGGTTCGGCGCTTTCTACCGCACGGCGATCTTCCTGCCCACGCTGCTCTCCTTCGTCATCGTCGGCT
TCATCTGGAAGCTGATCCTGTCGCCTATCTGGGGCGTCGCCCCTTTCCTTCTGGATTCGGTCGGGCTGAGATCGCTATTC
GCGCCCTGGCTCGGCAAACCCGACACCGCGCTCATCGCCGTTTCGCTGATTTCCGTCTGGCAATATGTCGGCATCCCGAT
GATGCTGATTTACGCGGCACTCCTCAATATTCCGGACGAGGTGACCGAGGCAGCGGAGCTCGACGGCGTCACCGGCTGGA
GCCAGTTCTGGAAGATCAAGCTGCCTTTGATCCTTCCGGCCATCGGCATCGTCTCGATCCTCACCTTCGTCGGCAATTTC
AACGCCTTCGACCTGATCTACACGGTGCAAGGGGCACTTGCCGGGCCGGATAAGTCGACCGACATCCTGGGCACCCTCCT
TTATCGCACTTTCTTCGGCTTCCAGCTCCAACTCGGCGACCGGTCGATGGGCGCCACGATCGCCGCGATCATGTTCCTGA
TCATCCTCGCCGGCGTTTCGCTTTATCTCTTCGGCATTCAGCGCCGCATGCGCCGCTATCAGTTCTAG

Upstream 100 bases:

>100_bases
GCATCATGACGATCGAGGTGCGCGGCAGGGGTCCCGCACCTGATTTCGATATCGAGGCTGCGCCCGTTGGCCAGCCGGTT
TGAGAACGGGCCAGAGGCCG

Downstream 100 bases:

>100_bases
GGAGGGAAAAAGATGTCGAAAGCACGCGCCTCCTACATCCGTATCGGCGCCGTTCACGCGGCATTGATCGCCTATACGCT
CGTCGCCCTGTTTCCGGTCT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MKPRENLTDVSEIKRPRRWHILVFLLPALVVYTAVMILPLVETLRQSLYNTVDGQLTFVGLGNFKVLFGDPRWAADFWNA
LKNNFVFFLIHMAVQNPIGIALAAMLSVPKLRFGAFYRTAIFLPTLLSFVIVGFIWKLILSPIWGVAPFLLDSVGLRSLF
APWLGKPDTALIAVSLISVWQYVGIPMMLIYAALLNIPDEVTEAAELDGVTGWSQFWKIKLPLILPAIGIVSILTFVGNF
NAFDLIYTVQGALAGPDKSTDILGTLLYRTFFGFQLQLGDRSMGATIAAIMFLIILAGVSLYLFGIQRRMRRYQF

Sequences:

>Translated_315_residues
MKPRENLTDVSEIKRPRRWHILVFLLPALVVYTAVMILPLVETLRQSLYNTVDGQLTFVGLGNFKVLFGDPRWAADFWNA
LKNNFVFFLIHMAVQNPIGIALAAMLSVPKLRFGAFYRTAIFLPTLLSFVIVGFIWKLILSPIWGVAPFLLDSVGLRSLF
APWLGKPDTALIAVSLISVWQYVGIPMMLIYAALLNIPDEVTEAAELDGVTGWSQFWKIKLPLILPAIGIVSILTFVGNF
NAFDLIYTVQGALAGPDKSTDILGTLLYRTFFGFQLQLGDRSMGATIAAIMFLIILAGVSLYLFGIQRRMRRYQF
>Mature_315_residues
MKPRENLTDVSEIKRPRRWHILVFLLPALVVYTAVMILPLVETLRQSLYNTVDGQLTFVGLGNFKVLFGDPRWAADFWNA
LKNNFVFFLIHMAVQNPIGIALAAMLSVPKLRFGAFYRTAIFLPTLLSFVIVGFIWKLILSPIWGVAPFLLDSVGLRSLF
APWLGKPDTALIAVSLISVWQYVGIPMMLIYAALLNIPDEVTEAAELDGVTGWSQFWKIKLPLILPAIGIVSILTFVGNF
NAFDLIYTVQGALAGPDKSTDILGTLLYRTFFGFQLQLGDRSMGATIAAIMFLIILAGVSLYLFGIQRRMRRYQF

Specific function: Probably part of the binding-protein-dependent transport system yurMNO. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=244, Percent_Identity=27.4590163934426, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789861, Length=309, Percent_Identity=29.4498381877023, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1790465, Length=255, Percent_Identity=29.8039215686275, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35298; Mature: 35298

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPRENLTDVSEIKRPRRWHILVFLLPALVVYTAVMILPLVETLRQSLYNTVDGQLTFVG
CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
LGNFKVLFGDPRWAADFWNALKNNFVFFLIHMAVQNPIGIALAAMLSVPKLRFGAFYRTA
ECCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHH
IFLPTLLSFVIVGFIWKLILSPIWGVAPFLLDSVGLRSLFAPWLGKPDTALIAVSLISVW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QYVGIPMMLIYAALLNIPDEVTEAAELDGVTGWSQFWKIKLPLILPAIGIVSILTFVGNF
HHHCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHEEEHHHHHHHHHHHHHHHHHCCC
NAFDLIYTVQGALAGPDKSTDILGTLLYRTFFGFQLQLGDRSMGATIAAIMFLIILAGVS
CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHH
LYLFGIQRRMRRYQF
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MKPRENLTDVSEIKRPRRWHILVFLLPALVVYTAVMILPLVETLRQSLYNTVDGQLTFVG
CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
LGNFKVLFGDPRWAADFWNALKNNFVFFLIHMAVQNPIGIALAAMLSVPKLRFGAFYRTA
ECCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHH
IFLPTLLSFVIVGFIWKLILSPIWGVAPFLLDSVGLRSLFAPWLGKPDTALIAVSLISVW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QYVGIPMMLIYAALLNIPDEVTEAAELDGVTGWSQFWKIKLPLILPAIGIVSILTFVGNF
HHHCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHEEEHHHHHHHHHHHHHHHHHCCC
NAFDLIYTVQGALAGPDKSTDILGTLLYRTFFGFQLQLGDRSMGATIAAIMFLIILAGVS
CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHH
LYLFGIQRRMRRYQF
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]