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The map label for this gene is ycjP [C]

Identifier: 150398591

GI number: 150398591

Start: 3610228

End: 3611067

Strand: Reverse

Name: ycjP [C]

Synonym: Smed_3402

Alternate gene names: 150398591

Gene position: 3611067-3610228 (Counterclockwise)

Preceding gene: 150398592

Following gene: 150398590

Centisome position: 95.48

GC content: 61.19

Gene sequence:

>840_bases
ATGTCGAAAGCACGCGCCTCCTACATCCGTATCGGCGCCGTTCACGCGGCATTGATCGCCTATACGCTCGTCGCCCTGTT
TCCGGTCTTCCTGACGATCGCGAATTCGTTCAAGAGCCGCAACGCGATCTTCCGGGAGCCACTGGCAATCCCGACACCCG
AAACCTTCAGCCTGATCGGCTACGAAACGGTGCTGAAACAGGGTGACTTCGTCGGCTATTTCCAGAACAGCATCATCGTC
ACCGTGGTCTCGATCGCGCTCGTCCTGCTCTTCGGCGCCATGGCAGCCTTTGCCCTTTCCGAATACCGCTTCCGCGGCAA
TACGCTGATGGGGCTCTATCTCGCGTTGGGCATCATGATCCCGATCCGGCTCGGCACGGTCGCCATCCTTCAGGGCATGG
TGGCGGCCGATCTCGTCAATACGCTGACGGCGCTGATCCTCGTCTATACGGCGCAAGGTCTGCCGCTCGCGGTGTTCATC
CTGTCGGAGTTCATGCGCACCGTGTCGGACGACCTGAAGAATGCAGGGCGCATCGACGGGTTGTCCGAATATGCGATCTT
CCTGCGGCTGGTGCTGCCGCTGATCCGACCGGCCATGGCGACGGTCGCCGTCTTCACCATGATCCCCATCTGGAACGACC
TGTGGTTCCCGCTGATCCTCGCGCCGGCCGAGGCGACCAAGACCGTCACGCTCGGCTCGCAGATCTTCATCGGCCAGTTC
GTCACCAACTGGAACGCAGTTCTCTCGGCACTGTCGCTGGCGATCTTCCCGGTGCTCGTCCTCTACGTCATCTTCTCGCG
GCAACTGATCCGCGGCATCACGGCAGGAGCAGTCAAGTGA

Upstream 100 bases:

>100_bases
CGCCGCGATCATGTTCCTGATCATCCTCGCCGGCGTTTCGCTTTATCTCTTCGGCATTCAGCGCCGCATGCGCCGCTATC
AGTTCTAGGGAGGGAAAAAG

Downstream 100 bases:

>100_bases
ATCCATCCGCATCCCCGATTCGCGTGCTCAGCGCCGGCCTCGGCAATATGGGCCGCAGCCACGCGCTCGCCTATCATCAG
AACCCCGGCTTCGAAGTCGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MSKARASYIRIGAVHAALIAYTLVALFPVFLTIANSFKSRNAIFREPLAIPTPETFSLIGYETVLKQGDFVGYFQNSIIV
TVVSIALVLLFGAMAAFALSEYRFRGNTLMGLYLALGIMIPIRLGTVAILQGMVAADLVNTLTALILVYTAQGLPLAVFI
LSEFMRTVSDDLKNAGRIDGLSEYAIFLRLVLPLIRPAMATVAVFTMIPIWNDLWFPLILAPAEATKTVTLGSQIFIGQF
VTNWNAVLSALSLAIFPVLVLYVIFSRQLIRGITAGAVK

Sequences:

>Translated_279_residues
MSKARASYIRIGAVHAALIAYTLVALFPVFLTIANSFKSRNAIFREPLAIPTPETFSLIGYETVLKQGDFVGYFQNSIIV
TVVSIALVLLFGAMAAFALSEYRFRGNTLMGLYLALGIMIPIRLGTVAILQGMVAADLVNTLTALILVYTAQGLPLAVFI
LSEFMRTVSDDLKNAGRIDGLSEYAIFLRLVLPLIRPAMATVAVFTMIPIWNDLWFPLILAPAEATKTVTLGSQIFIGQF
VTNWNAVLSALSLAIFPVLVLYVIFSRQLIRGITAGAVK
>Mature_278_residues
SKARASYIRIGAVHAALIAYTLVALFPVFLTIANSFKSRNAIFREPLAIPTPETFSLIGYETVLKQGDFVGYFQNSIIVT
VVSIALVLLFGAMAAFALSEYRFRGNTLMGLYLALGIMIPIRLGTVAILQGMVAADLVNTLTALILVYTAQGLPLAVFIL
SEFMRTVSDDLKNAGRIDGLSEYAIFLRLVLPLIRPAMATVAVFTMIPIWNDLWFPLILAPAEATKTVTLGSQIFIGQFV
TNWNAVLSALSLAIFPVLVLYVIFSRQLIRGITAGAVK

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Ycjnop. Probably Responsible For The Translocation Of The Substrate Across The Membrane. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=287, Percent_Identity=28.9198606271777, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1789860, Length=267, Percent_Identity=25.4681647940075, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30370; Mature: 30239

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKARASYIRIGAVHAALIAYTLVALFPVFLTIANSFKSRNAIFREPLAIPTPETFSLIG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHH
YETVLKQGDFVGYFQNSIIVTVVSIALVLLFGAMAAFALSEYRFRGNTLMGLYLALGIMI
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
PIRLGTVAILQGMVAADLVNTLTALILVYTAQGLPLAVFILSEFMRTVSDDLKNAGRIDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
LSEYAIFLRLVLPLIRPAMATVAVFTMIPIWNDLWFPLILAPAEATKTVTLGSQIFIGQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHHHHH
VTNWNAVLSALSLAIFPVLVLYVIFSRQLIRGITAGAVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKARASYIRIGAVHAALIAYTLVALFPVFLTIANSFKSRNAIFREPLAIPTPETFSLIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHH
YETVLKQGDFVGYFQNSIIVTVVSIALVLLFGAMAAFALSEYRFRGNTLMGLYLALGIMI
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
PIRLGTVAILQGMVAADLVNTLTALILVYTAQGLPLAVFILSEFMRTVSDDLKNAGRIDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
LSEYAIFLRLVLPLIRPAMATVAVFTMIPIWNDLWFPLILAPAEATKTVTLGSQIFIGQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHHHHH
VTNWNAVLSALSLAIFPVLVLYVIFSRQLIRGITAGAVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8920183 [H]