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The map label for this gene is ddpA [H]

Identifier: 150398498

GI number: 150398498

Start: 3500639

End: 3502225

Strand: Reverse

Name: ddpA [H]

Synonym: Smed_3308

Alternate gene names: 150398498

Gene position: 3502225-3500639 (Counterclockwise)

Preceding gene: 150398506

Following gene: 150398497

Centisome position: 92.6

GC content: 58.92

Gene sequence:

>1587_bases
ATGCGCATCGGAAACAAACGCGGATTGCAGTTTGCCACGGCATTGCTGTCTTGCATGGCAGGTTTTGCGGGCCCGGCTTC
GGCTCAAAGCTCTGATCTCGTCGTCAACAGCGCGGTGGCGCCCAGCACGCTGGATCCGGCCTGGGCCTGCGGGTTGCAGG
AAATCAGTTTTCTGCAGAATTTCTATGTGCGTCTGGTTCAGAACGGCACCGCGGAAGGGCCCGAGGGCACAGGGGTCGTC
GATTATTCCAAGATCGAGCCCTATCTCGCCAAGTCCTGGGAGGTCAGTGAGGATGGGTTGGTCTACACGTTCCACCTCAA
GGAAGGCTACACGTTCGAAAGCGGCAAGCCGGTCGATGCGGATGCTGTTCGCTATTCCCTACAGCGCGTGCTTGACATGG
CCGGCTGCGGCCGGTTCTTCCTGACAGACGGTCATATCGATCCTGTCATTTTCAAGTCCATCGAAGCGGTCGATCCGCTG
ACGGTCGAGATCACGCTCAACAAGCCAAACGGCAACATGCTGGGCGATCTGGCCACCCATGCGGCATCGATCGTCGATCC
CTCCATCGTCGAAGCCAATGGCGGCGTCACGCCCGGTCAGCCGAATGAGTACATGGCGGCAAATGTAACCGAATCCGGAC
CGTTCCTTTTGGATTCCTATACGGCCAACCAGAATGCTCGCCTAGTGGCCAATCCGGCTTTCGCAGGCGAAGCGCCGGCA
TCGAAGGCCATCAACGTCAACTGGATCACCGCCTTGCCGACGCTTTTGCTGCAGGCACGTACCGGGCAGGCCGATATCAC
CTTCGGCCTTGCCAAGCAGGCCGTCAAAACCATGGTCAGCAATGCCGGCACGCGGGTGATCGCCTATTCCAGTCCATTTG
CCCAGCAGATGATTCTGCCCAATACCAAGGCACCCTGGAACAACAAGCTTTTCCGACAAGCCGTCGCCCATGCCGTGCCC
TATGAAAGCATCGTTTCGCGCGTCGCCTATGGTTACGGCACGCAATATTACGGACCGATTCCGCCCAGCCTGCCCGGCTT
CAACGCCGAGCTCAGCAAGCCGGTCCCCTTCGATCTCGATCGGGCAAAAGATCTGATCGCCGAAAGCGGCGTGGCAACAC
CCGTCGATGTCGAGGTGATGATCCAGGAAGGCGACGCCACCCAGCAGCAACTGGCCACCATTCTGCAAAGCACTTGGAAA
GATCTCGGCATCACCCTCAAGATCCGCGTGGCGCCGGCTGCCGAATTCCAGGACCTGTCACAGGGTCATCGGGTTCAGTC
GCTGATGCGTCTCGACGGTCCCGGCGTGTTCGAGGTCGGCTATTACTGGGGCTATGACGCGGTTTGCGGCAATCCCAACA
ATCTCACCGAATATTGCAACAAAGACATGGATGCGCTGATCGAGAGACTGCGCGCCTCTTCCGACCCGGCCGAGCGACAG
ACGATCATGGACCAGGCCACGGAAATCTGGCGTGCGGATTATCCGAAGATCCTGTTCTTCGAGGATCAGCCGGTCGTCGT
TCTCTCCGATGCCGTGACCAAGTTCACCTTCTCGCCGCTCCCCGACTATCGCTACTGGGCGAAATAA

Upstream 100 bases:

>100_bases
TTTTCCTATAGGCGCGCTCTTGGAGGGGCGTTGAGAGCGCGCGCCACGTAGCAATACGTGCAGGTCATTTTTCGACGCCC
GCCGTCGAAAGGATGTTTGG

Downstream 100 bases:

>100_bases
ACTCTCCGGAGGAAAGAAAGAATGGCAACGCGTATTGGTGTCGACATTGGCGGCACGTTCACCGATCTCGTCTATTTCGA
CGAGCGGACCGGCAAAACGG

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MRIGNKRGLQFATALLSCMAGFAGPASAQSSDLVVNSAVAPSTLDPAWACGLQEISFLQNFYVRLVQNGTAEGPEGTGVV
DYSKIEPYLAKSWEVSEDGLVYTFHLKEGYTFESGKPVDADAVRYSLQRVLDMAGCGRFFLTDGHIDPVIFKSIEAVDPL
TVEITLNKPNGNMLGDLATHAASIVDPSIVEANGGVTPGQPNEYMAANVTESGPFLLDSYTANQNARLVANPAFAGEAPA
SKAINVNWITALPTLLLQARTGQADITFGLAKQAVKTMVSNAGTRVIAYSSPFAQQMILPNTKAPWNNKLFRQAVAHAVP
YESIVSRVAYGYGTQYYGPIPPSLPGFNAELSKPVPFDLDRAKDLIAESGVATPVDVEVMIQEGDATQQQLATILQSTWK
DLGITLKIRVAPAAEFQDLSQGHRVQSLMRLDGPGVFEVGYYWGYDAVCGNPNNLTEYCNKDMDALIERLRASSDPAERQ
TIMDQATEIWRADYPKILFFEDQPVVVLSDAVTKFTFSPLPDYRYWAK

Sequences:

>Translated_528_residues
MRIGNKRGLQFATALLSCMAGFAGPASAQSSDLVVNSAVAPSTLDPAWACGLQEISFLQNFYVRLVQNGTAEGPEGTGVV
DYSKIEPYLAKSWEVSEDGLVYTFHLKEGYTFESGKPVDADAVRYSLQRVLDMAGCGRFFLTDGHIDPVIFKSIEAVDPL
TVEITLNKPNGNMLGDLATHAASIVDPSIVEANGGVTPGQPNEYMAANVTESGPFLLDSYTANQNARLVANPAFAGEAPA
SKAINVNWITALPTLLLQARTGQADITFGLAKQAVKTMVSNAGTRVIAYSSPFAQQMILPNTKAPWNNKLFRQAVAHAVP
YESIVSRVAYGYGTQYYGPIPPSLPGFNAELSKPVPFDLDRAKDLIAESGVATPVDVEVMIQEGDATQQQLATILQSTWK
DLGITLKIRVAPAAEFQDLSQGHRVQSLMRLDGPGVFEVGYYWGYDAVCGNPNNLTEYCNKDMDALIERLRASSDPAERQ
TIMDQATEIWRADYPKILFFEDQPVVVLSDAVTKFTFSPLPDYRYWAK
>Mature_528_residues
MRIGNKRGLQFATALLSCMAGFAGPASAQSSDLVVNSAVAPSTLDPAWACGLQEISFLQNFYVRLVQNGTAEGPEGTGVV
DYSKIEPYLAKSWEVSEDGLVYTFHLKEGYTFESGKPVDADAVRYSLQRVLDMAGCGRFFLTDGHIDPVIFKSIEAVDPL
TVEITLNKPNGNMLGDLATHAASIVDPSIVEANGGVTPGQPNEYMAANVTESGPFLLDSYTANQNARLVANPAFAGEAPA
SKAINVNWITALPTLLLQARTGQADITFGLAKQAVKTMVSNAGTRVIAYSSPFAQQMILPNTKAPWNNKLFRQAVAHAVP
YESIVSRVAYGYGTQYYGPIPPSLPGFNAELSKPVPFDLDRAKDLIAESGVATPVDVEVMIQEGDATQQQLATILQSTWK
DLGITLKIRVAPAAEFQDLSQGHRVQSLMRLDGPGVFEVGYYWGYDAVCGNPNNLTEYCNKDMDALIERLRASSDPAERQ
TIMDQATEIWRADYPKILFFEDQPVVVLSDAVTKFTFSPLPDYRYWAK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=523, Percent_Identity=28.1070745697897, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1787052, Length=539, Percent_Identity=25.417439703154, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI1789966, Length=569, Percent_Identity=23.5500878734622, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1789887, Length=338, Percent_Identity=27.2189349112426, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787495, Length=443, Percent_Identity=25.2821670428894, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1789397, Length=465, Percent_Identity=24.5161290322581, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787551, Length=263, Percent_Identity=25.4752851711027, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI87081878, Length=418, Percent_Identity=24.1626794258373, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57423; Mature: 57423

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIGNKRGLQFATALLSCMAGFAGPASAQSSDLVVNSAVAPSTLDPAWACGLQEISFLQN
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHH
FYVRLVQNGTAEGPEGTGVVDYSKIEPYLAKSWEVSEDGLVYTFHLKEGYTFESGKPVDA
HHHHHHHCCCCCCCCCCCEEEHHHCCHHHHCCCCCCCCCEEEEEEECCCEEECCCCCCCH
DAVRYSLQRVLDMAGCGRFFLTDGHIDPVIFKSIEAVDPLTVEITLNKPNGNMLGDLATH
HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHH
AASIVDPSIVEANGGVTPGQPNEYMAANVTESGPFLLDSYTANQNARLVANPAFAGEAPA
HHHHCCCCEEECCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCEEEECCCCCCCCCC
SKAINVNWITALPTLLLQARTGQADITFGLAKQAVKTMVSNAGTRVIAYSSPFAQQMILP
CCEEEEEHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCC
NTKAPWNNKLFRQAVAHAVPYESIVSRVAYGYGTQYYGPIPPSLPGFNAELSKPVPFDLD
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
RAKDLIAESGVATPVDVEVMIQEGDATQQQLATILQSTWKDLGITLKIRVAPAAEFQDLS
HHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHH
QGHRVQSLMRLDGPGVFEVGYYWGYDAVCGNPNNLTEYCNKDMDALIERLRASSDPAERQ
HHHHHHHHHHCCCCCEEEECEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCHHHHH
TIMDQATEIWRADYPKILFFEDQPVVVLSDAVTKFTFSPLPDYRYWAK
HHHHHHHHHHHCCCCEEEEECCCCEEEEECCHHHEECCCCCCCCCCCC
>Mature Secondary Structure
MRIGNKRGLQFATALLSCMAGFAGPASAQSSDLVVNSAVAPSTLDPAWACGLQEISFLQN
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHH
FYVRLVQNGTAEGPEGTGVVDYSKIEPYLAKSWEVSEDGLVYTFHLKEGYTFESGKPVDA
HHHHHHHCCCCCCCCCCCEEEHHHCCHHHHCCCCCCCCCEEEEEEECCCEEECCCCCCCH
DAVRYSLQRVLDMAGCGRFFLTDGHIDPVIFKSIEAVDPLTVEITLNKPNGNMLGDLATH
HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHH
AASIVDPSIVEANGGVTPGQPNEYMAANVTESGPFLLDSYTANQNARLVANPAFAGEAPA
HHHHCCCCEEECCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCEEEECCCCCCCCCC
SKAINVNWITALPTLLLQARTGQADITFGLAKQAVKTMVSNAGTRVIAYSSPFAQQMILP
CCEEEEEHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCC
NTKAPWNNKLFRQAVAHAVPYESIVSRVAYGYGTQYYGPIPPSLPGFNAELSKPVPFDLD
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
RAKDLIAESGVATPVDVEVMIQEGDATQQQLATILQSTWKDLGITLKIRVAPAAEFQDLS
HHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHH
QGHRVQSLMRLDGPGVFEVGYYWGYDAVCGNPNNLTEYCNKDMDALIERLRASSDPAERQ
HHHHHHHHHHCCCCCEEEECEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCHHHHH
TIMDQATEIWRADYPKILFFEDQPVVVLSDAVTKFTFSPLPDYRYWAK
HHHHHHHHHHHCCCCEEEEECCCCEEEEECCHHHEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]