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The map label for this gene is ynjB [H]

Identifier: 150398470

GI number: 150398470

Start: 3461244

End: 3462470

Strand: Reverse

Name: ynjB [H]

Synonym: Smed_3278

Alternate gene names: 150398470

Gene position: 3462470-3461244 (Counterclockwise)

Preceding gene: 150398471

Following gene: 150398469

Centisome position: 91.55

GC content: 60.96

Gene sequence:

>1227_bases
ATGATCAGGCTGGTCGGAAAAATGATCGCCGCGGCAATGCTGTCGCTTGGCCTCGCCGCGGGGGCCTTCTCCGCGGACCC
AGGCAAGTGGAAAGCGGTCGTTGCACAAGCCAGGGGTCAGACGGTCTATTTCAACGCCTGGGGAGGCGCTGCAAATATCA
ACGCCTACATCGAATGGGCCGGCGACGAGATGAAGAGCCGTTACGGCGTGACCGTCGTTCATGTGAAGCTCGACGACACC
GCCAAAGCGGCCGGGACTGTGCTTGCGGAGAAAGCGGCAGGAAAAGACGAGCACGGCGCGGTCGATCTGGTGTGGATCAA
CGGCGAGAATTTCGCCGCCATGAAGCGTGAAGGGCTGCTTTACGGGCCCGACTGGGCAACGAAACTGCCGAACTGGCGCT
ATGTCGACACGGAAAACAAGCCGACGGTGCTGACCGATTTTACCATTCCGACCGAAGGGCTGGAGAGCCCCTGGGGCGGC
GCCAAGCTCGTGTTCTTCTACGATCAGGCGCGCACCCAGGCGACCGAATTGCCTGATTCCGCGGCGGATCTTCTGAAATG
GGCTGAAGCCAATCCAGGGCGCTTCTCCTACCCGCAACCACCGGATTTCACCGGATCTTCCTTCCTGAAGCAGGTGCTGA
GCGAAGTCGTCTCGGACAGGAGCAAGCTGCAGACACCCGTTGACGACGCTACTTTCGATACGGATGTGGCGCCCTTGTTT
GACTATCTCGACAAGCTCACGCCGCACTTGTGGCGAAAGGGCAAGGCCTTCCCGCAGAACTATGCGGACATGAAGCAGAA
GCTCGCCGACGGCGAGCTCGACATCATCTTCGCCTTCAACCCCGCAGAAGCCTCCTCCGCCATCGCCGATGGCGAGCTGC
CGGAAACGGTGCGTTCCTTCGTCTTTTCAGGCGGCACGCTTGGTAACACGCATTTCGTCGCCATTCCCTACAATGCGACG
GCGAAGGCCGGCGCGCTTCTGCTTGCCGATTTTCTCCTCTCGCCCGAGGCACAGCTTCGCAAGCAGGACCCGAAGGTCTG
GGGGGATCCCACAGTTCTCTCCCTCTCAAAACTTCCGGCAGCCGACCGATCCGCCTTCGAGCGTCTGGAGCTCGGCATTG
CAACGCTTCCTCCCGACAAACTTGGTCCCGCGCTCGACGAACCGCATCCGGACTGGATGACACGGATCGAAACCGAGTGG
ATCCGGCGCTATGGCGCGGCCAACTGA

Upstream 100 bases:

>100_bases
GACGCGTCTCACCGAAACGTGACGCTGGTGGAGGGCTGCATGCATTGACGCGGCCCGCCCTTGTCTTACCCTCGGCGGCA
CCAGACAGGGAAGGAGCGCT

Downstream 100 bases:

>100_bases
AGTGCGACGCACTTCAGGCGGAAACGCGCTCCTCGCCTTCATTCTGGGCCTTCCTGTCCTCGCCGGGATTGCAGGCACGG
TTCTGCCGGCCTTCGGCTAC

Product: putative ABC transporter solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MIRLVGKMIAAAMLSLGLAAGAFSADPGKWKAVVAQARGQTVYFNAWGGAANINAYIEWAGDEMKSRYGVTVVHVKLDDT
AKAAGTVLAEKAAGKDEHGAVDLVWINGENFAAMKREGLLYGPDWATKLPNWRYVDTENKPTVLTDFTIPTEGLESPWGG
AKLVFFYDQARTQATELPDSAADLLKWAEANPGRFSYPQPPDFTGSSFLKQVLSEVVSDRSKLQTPVDDATFDTDVAPLF
DYLDKLTPHLWRKGKAFPQNYADMKQKLADGELDIIFAFNPAEASSAIADGELPETVRSFVFSGGTLGNTHFVAIPYNAT
AKAGALLLADFLLSPEAQLRKQDPKVWGDPTVLSLSKLPAADRSAFERLELGIATLPPDKLGPALDEPHPDWMTRIETEW
IRRYGAAN

Sequences:

>Translated_408_residues
MIRLVGKMIAAAMLSLGLAAGAFSADPGKWKAVVAQARGQTVYFNAWGGAANINAYIEWAGDEMKSRYGVTVVHVKLDDT
AKAAGTVLAEKAAGKDEHGAVDLVWINGENFAAMKREGLLYGPDWATKLPNWRYVDTENKPTVLTDFTIPTEGLESPWGG
AKLVFFYDQARTQATELPDSAADLLKWAEANPGRFSYPQPPDFTGSSFLKQVLSEVVSDRSKLQTPVDDATFDTDVAPLF
DYLDKLTPHLWRKGKAFPQNYADMKQKLADGELDIIFAFNPAEASSAIADGELPETVRSFVFSGGTLGNTHFVAIPYNAT
AKAGALLLADFLLSPEAQLRKQDPKVWGDPTVLSLSKLPAADRSAFERLELGIATLPPDKLGPALDEPHPDWMTRIETEW
IRRYGAAN
>Mature_408_residues
MIRLVGKMIAAAMLSLGLAAGAFSADPGKWKAVVAQARGQTVYFNAWGGAANINAYIEWAGDEMKSRYGVTVVHVKLDDT
AKAAGTVLAEKAAGKDEHGAVDLVWINGENFAAMKREGLLYGPDWATKLPNWRYVDTENKPTVLTDFTIPTEGLESPWGG
AKLVFFYDQARTQATELPDSAADLLKWAEANPGRFSYPQPPDFTGSSFLKQVLSEVVSDRSKLQTPVDDATFDTDVAPLF
DYLDKLTPHLWRKGKAFPQNYADMKQKLADGELDIIFAFNPAEASSAIADGELPETVRSFVFSGGTLGNTHFVAIPYNAT
AKAGALLLADFLLSPEAQLRKQDPKVWGDPTVLSLSKLPAADRSAFERLELGIATLPPDKLGPALDEPHPDWMTRIETEW
IRRYGAAN

Specific function: Unknown

COG id: COG4134

COG function: function code R; ABC-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081966, Length=377, Percent_Identity=48.2758620689655, Blast_Score=333, Evalue=1e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 44496; Mature: 44496

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLVGKMIAAAMLSLGLAAGAFSADPGKWKAVVAQARGQTVYFNAWGGAANINAYIEWA
CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHEECCCCCEEEEECCCCCCCCEEEEEEC
GDEMKSRYGVTVVHVKLDDTAKAAGTVLAEKAAGKDEHGAVDLVWINGENFAAMKREGLL
CHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEHHCCCCE
YGPDWATKLPNWRYVDTENKPTVLTDFTIPTEGLESPWGGAKLVFFYDQARTQATELPDS
ECCCHHHCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHCCCHH
AADLLKWAEANPGRFSYPQPPDFTGSSFLKQVLSEVVSDRSKLQTPVDDATFDTDVAPLF
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
DYLDKLTPHLWRKGKAFPQNYADMKQKLADGELDIIFAFNPAEASSAIADGELPETVRSF
HHHHHHCHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHCCCCCCHHHHHHH
VFSGGTLGNTHFVAIPYNATAKAGALLLADFLLSPEAQLRKQDPKVWGDPTVLSLSKLPA
HHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEHHHCCC
ADRSAFERLELGIATLPPDKLGPALDEPHPDWMTRIETEWIRRYGAAN
CHHHHHHHHHHCCEECCCHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIRLVGKMIAAAMLSLGLAAGAFSADPGKWKAVVAQARGQTVYFNAWGGAANINAYIEWA
CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHEECCCCCEEEEECCCCCCCCEEEEEEC
GDEMKSRYGVTVVHVKLDDTAKAAGTVLAEKAAGKDEHGAVDLVWINGENFAAMKREGLL
CHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEHHCCCCE
YGPDWATKLPNWRYVDTENKPTVLTDFTIPTEGLESPWGGAKLVFFYDQARTQATELPDS
ECCCHHHCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHCCCHH
AADLLKWAEANPGRFSYPQPPDFTGSSFLKQVLSEVVSDRSKLQTPVDDATFDTDVAPLF
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
DYLDKLTPHLWRKGKAFPQNYADMKQKLADGELDIIFAFNPAEASSAIADGELPETVRSF
HHHHHHCHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHCCCCCCHHHHHHH
VFSGGTLGNTHFVAIPYNATAKAGALLLADFLLSPEAQLRKQDPKVWGDPTVLSLSKLPA
HHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEHHHCCC
ADRSAFERLELGIATLPPDKLGPALDEPHPDWMTRIETEWIRRYGAAN
CHHHHHHHHHHCCEECCCHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10806384 [H]