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The map label for this gene is ynjC [H]

Identifier: 150398469

GI number: 150398469

Start: 3459563

End: 3461260

Strand: Reverse

Name: ynjC [H]

Synonym: Smed_3277

Alternate gene names: 150398469

Gene position: 3461260-3459563 (Counterclockwise)

Preceding gene: 150398470

Following gene: 150398468

Centisome position: 91.52

GC content: 64.66

Gene sequence:

>1698_bases
ATGGCGCGGCCAACTGAAGTGCGACGCACTTCAGGCGGAAACGCGCTCCTCGCCTTCATTCTGGGCCTTCCTGTCCTCGC
CGGGATTGCAGGCACGGTTCTGCCGGCCTTCGGCTACCTGCCGGCGCTCGGTGGATCTCGCGTCACGCTTGCCCACATCG
CCGAACTCGCCGGCCAGCCGCACATCCTTCGCTCGGTCCTGACCGGTCTCGCAGCCGGTTTGCTGACCACCGCCGGGGCG
ATATCGATCGTGGGCGCGTTCGTCGCGGGCTTTGCCGGCACGCGCCTTTTCGCCCGCATTCAGCATCTCGTCTCTCCCTT
GCTGGCGGTTCCGCATGCGGCCGCCGCCTTTGCGCTGGCCTTCCTCGTCGCCCCGTCCGGTTTCCTGCTCCGGCTGATTT
CGCCGGAGTTGACGGGGTTCACGCGACCGCCGGACTGGCCCCTTCCCAACGACCCCTTCGCGCTCACGATGATTGCCGGG
CTCCTCGTCAAAGAGGTTCCGTTTCTCTTTCTGGTGACGCTTGCCGCTCTGCCGCAACTTCCGCTGATCAGAGCCCGGCG
CCTCGCGGCCGCGCTCGGATACGGACGCATTGCCGGCTTCGCCGTCTGCCTTTGGCCGGCCCTCTACCGCCAGATCCGCT
TGCCGGTCTTCGCCGTGCTCGTCTATTCCGTCTCCGTCGTCGACGTGGCGATGATCCTCGGGCCGAAGCTGCCGCCTACA
TTGCCGGTGCGCATCGCGCAATGGACGGGATCGCCTGAGCTCGGCGCGCGATTCCTCGCATCGGCGGGGGCTTTCCTGCA
AATTGGAGTCGTGGTCGCGGCAATGGCGATCTGGATCGTGCTGGAACGGATCGGCAAGGCCGTCCTTGAACGCCTGATTT
TTTCGGGACGGCGCCTTGCACGGGACGGCGCCCTTCGCGCCGCGGCCGCCCTCGTCATGACCGCTTGTACGGCCGCCATC
TTCGCGGGGCTCGGCCTGCTGTCGATCTGGTCCTTTGCTGGTCTCTGGCCCTTTCCCGATGCACTCCCCGGAAGTCTCAC
CTCGAAAACCTGGATGCGCACGCTGCCTCAACTTCGGACGTCGTTTGGCACCACGATCGCGCTTGCTCTCTGCGCAGCGT
TGCTGTCGCTCCTGTTTACGATCCTCCTGCTCTATCGCAACGGCACTGCCGCGGGACAAAGGAATCCCGGCTATCGGCTG
CTCTATCTTCCCTTGCTCGTCCCCGAGATCAGTTTCGTATTCGGGCTGCAGGTCCTGATGCTCTCAGCCGGTCTTTTGCC
GGGTTTCGCGAGCGTGCTGGCGGTTCATTTCATTTTCGTCCTCCCGTATGTCCTTCTGTCGTTGTCAGCCCCCTGGCAAG
CGTTGGATCCGCGCTTTGAAAGAATCGCCGCCGGCTTCGGCAAGTCCGCGCTGTCCATCCTGTTCACCGTCCGGCTGCCA
TTGCTCTTGCGCCCCTGCCTCACGGCGCTCGCCGTCGGCTTCGCGGTGTCGGTCAGTCTCTATCTGCCGACACTGCTTAT
CGGATCCGGGCGTCTGACGACGATCACGACCGAAGCGGTCGCACTCTCCTCGGGCGGCGACCGACGGGTCATCGGCATCT
ATGCTTTGGTGCAGGGGCTCCTGCCGTTTCTCGCGTTTTTCATTGCGTCGCTCGGGCCCCAGTTGCTATTCCGCAACCGG
CGGCTCATGAGGACGTGA

Upstream 100 bases:

>100_bases
CTCGGCATTGCAACGCTTCCTCCCGACAAACTTGGTCCCGCGCTCGACGAACCGCATCCGGACTGGATGACACGGATCGA
AACCGAGTGGATCCGGCGCT

Downstream 100 bases:

>100_bases
ATGCGGGAAAATGCCGGGACAAAATCTGCGAACAACACAGCATGCCTGACGCTCTCGAACATTACGATCCGTCTGGGCGG
CAGGATGCTGATCGCGCTTA

Product: putative permease ABC transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 565; Mature: 564

Protein sequence:

>565_residues
MARPTEVRRTSGGNALLAFILGLPVLAGIAGTVLPAFGYLPALGGSRVTLAHIAELAGQPHILRSVLTGLAAGLLTTAGA
ISIVGAFVAGFAGTRLFARIQHLVSPLLAVPHAAAAFALAFLVAPSGFLLRLISPELTGFTRPPDWPLPNDPFALTMIAG
LLVKEVPFLFLVTLAALPQLPLIRARRLAAALGYGRIAGFAVCLWPALYRQIRLPVFAVLVYSVSVVDVAMILGPKLPPT
LPVRIAQWTGSPELGARFLASAGAFLQIGVVVAAMAIWIVLERIGKAVLERLIFSGRRLARDGALRAAAALVMTACTAAI
FAGLGLLSIWSFAGLWPFPDALPGSLTSKTWMRTLPQLRTSFGTTIALALCAALLSLLFTILLLYRNGTAAGQRNPGYRL
LYLPLLVPEISFVFGLQVLMLSAGLLPGFASVLAVHFIFVLPYVLLSLSAPWQALDPRFERIAAGFGKSALSILFTVRLP
LLLRPCLTALAVGFAVSVSLYLPTLLIGSGRLTTITTEAVALSSGGDRRVIGIYALVQGLLPFLAFFIASLGPQLLFRNR
RLMRT

Sequences:

>Translated_565_residues
MARPTEVRRTSGGNALLAFILGLPVLAGIAGTVLPAFGYLPALGGSRVTLAHIAELAGQPHILRSVLTGLAAGLLTTAGA
ISIVGAFVAGFAGTRLFARIQHLVSPLLAVPHAAAAFALAFLVAPSGFLLRLISPELTGFTRPPDWPLPNDPFALTMIAG
LLVKEVPFLFLVTLAALPQLPLIRARRLAAALGYGRIAGFAVCLWPALYRQIRLPVFAVLVYSVSVVDVAMILGPKLPPT
LPVRIAQWTGSPELGARFLASAGAFLQIGVVVAAMAIWIVLERIGKAVLERLIFSGRRLARDGALRAAAALVMTACTAAI
FAGLGLLSIWSFAGLWPFPDALPGSLTSKTWMRTLPQLRTSFGTTIALALCAALLSLLFTILLLYRNGTAAGQRNPGYRL
LYLPLLVPEISFVFGLQVLMLSAGLLPGFASVLAVHFIFVLPYVLLSLSAPWQALDPRFERIAAGFGKSALSILFTVRLP
LLLRPCLTALAVGFAVSVSLYLPTLLIGSGRLTTITTEAVALSSGGDRRVIGIYALVQGLLPFLAFFIASLGPQLLFRNR
RLMRT
>Mature_564_residues
ARPTEVRRTSGGNALLAFILGLPVLAGIAGTVLPAFGYLPALGGSRVTLAHIAELAGQPHILRSVLTGLAAGLLTTAGAI
SIVGAFVAGFAGTRLFARIQHLVSPLLAVPHAAAAFALAFLVAPSGFLLRLISPELTGFTRPPDWPLPNDPFALTMIAGL
LVKEVPFLFLVTLAALPQLPLIRARRLAAALGYGRIAGFAVCLWPALYRQIRLPVFAVLVYSVSVVDVAMILGPKLPPTL
PVRIAQWTGSPELGARFLASAGAFLQIGVVVAAMAIWIVLERIGKAVLERLIFSGRRLARDGALRAAAALVMTACTAAIF
AGLGLLSIWSFAGLWPFPDALPGSLTSKTWMRTLPQLRTSFGTTIALALCAALLSLLFTILLLYRNGTAAGQRNPGYRLL
YLPLLVPEISFVFGLQVLMLSAGLLPGFASVLAVHFIFVLPYVLLSLSAPWQALDPRFERIAAGFGKSALSILFTVRLPL
LLRPCLTALAVGFAVSVSLYLPTLLIGSGRLTTITTEAVALSSGGDRRVIGIYALVQGLLPFLAFFIASLGPQLLFRNRR
LMRT

Specific function: Probably part of the binding-protein-dependent transport system ynjCD. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4135

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transmembrane type-1 domains [H]

Homologues:

Organism=Escherichia coli, GI145693149, Length=152, Percent_Identity=42.1052631578947, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 59883; Mature: 59752

Theoretical pI: Translated: 11.88; Mature: 11.88

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCHHHHHHCCHHCCC
>Mature Secondary Structure 
ARPTEVRRTSGGNALLAFILGLPVLAGIAGTVLPAFGYLPALGGSRVTLAHIAELAGQP
CCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCH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HHHHHHHHHHHCHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]