Click here to switch to the map view.

The map label for this gene is chvI [H]

Identifier: 150398444

GI number: 150398444

Start: 3433476

End: 3434198

Strand: Reverse

Name: chvI [H]

Synonym: Smed_3252

Alternate gene names: 150398444

Gene position: 3434198-3433476 (Counterclockwise)

Preceding gene: 150398449

Following gene: 150398443

Centisome position: 90.81

GC content: 61.55

Gene sequence:

>723_bases
ATGCAGACCATCGCGCTTGTCGATGACGACCGCAACATCCTGACATCCGTGTCTATCGCCCTGGAGGCCGAAGGCTATAA
GGTCGAGACCTATACGGATGGCGCATCGGCGCTCGAGGGTCTGGTGGCGCGCCCGCCTCACCTGGCCATCTTCGATATCA
AGATGCCCCGTATGGACGGCATGGAGCTTTTGCGGCGCCTGAGGCAGAAATCCGACCTGCCCGTCATCTTTCTCACGTCG
AAGGATGAAGAGATAGACGAGCTGTTCGGTCTCAAGATGGGTGCCGACGACTTCATCACCAAACCCTTCTCTCAGCGCCT
CCTGGTGGAGCGCGTCAAGGCGATCCTGCGTCGCGCGGCCAACCGGGAGGCTGCCGCCGGCGGGCCGGGTCCGGTGAAAA
ACGCCGACACGCCCTCCCGCTCGCTGGAGCGCGGACAGTTGGTCATGGATCAGGAGCGGCATACCTGCACCTGGAAAAAC
GAATCCGTCACGCTGACGGTCACGGAATTCCTGATCCTGCACGCCCTGGCGCAGCGCCCCGGCGTGGTGAAGAGCCGCGA
TGCCCTCATGGATGCTGCCTATGACGAACAGGTCTATGTCGACGACCGGACGATCGACAGCCACATCAAGCGGCTCCGCA
AGAAGTTCAAGATGGTCGACAACGACTTCGACATGATCGAAACCCTCTACGGCGTCGGCTACCGCTTCCGCGAGTCAGCC
TGA

Upstream 100 bases:

>100_bases
TTTATACTCAAGTAACGCGCCGTGACTCGCGGTTGCCGCGATTCTCGAAGCGTGGCTTGAAGCATACCGGCAACCCGGCC
CGAAAACGGAGTAGAATAAG

Downstream 100 bases:

>100_bases
GAAGCGAAGCAGCGGACTGCAGACGGGGACGTGGCACGCATCACCTTCGCCAGCGCTTGCGCGGCGGCTCCGGCTGGCGT
AGGGCATCGCGGAAACACGC

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MQTIALVDDDRNILTSVSIALEAEGYKVETYTDGASALEGLVARPPHLAIFDIKMPRMDGMELLRRLRQKSDLPVIFLTS
KDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRAANREAAAGGPGPVKNADTPSRSLERGQLVMDQERHTCTWKN
ESVTLTVTEFLILHALAQRPGVVKSRDALMDAAYDEQVYVDDRTIDSHIKRLRKKFKMVDNDFDMIETLYGVGYRFRESA

Sequences:

>Translated_240_residues
MQTIALVDDDRNILTSVSIALEAEGYKVETYTDGASALEGLVARPPHLAIFDIKMPRMDGMELLRRLRQKSDLPVIFLTS
KDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRAANREAAAGGPGPVKNADTPSRSLERGQLVMDQERHTCTWKN
ESVTLTVTEFLILHALAQRPGVVKSRDALMDAAYDEQVYVDDRTIDSHIKRLRKKFKMVDNDFDMIETLYGVGYRFRESA
>Mature_240_residues
MQTIALVDDDRNILTSVSIALEAEGYKVETYTDGASALEGLVARPPHLAIFDIKMPRMDGMELLRRLRQKSDLPVIFLTS
KDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRAANREAAAGGPGPVKNADTPSRSLERGQLVMDQERHTCTWKN
ESVTLTVTEFLILHALAQRPGVVKSRDALMDAAYDEQVYVDDRTIDSHIKRLRKKFKMVDNDFDMIETLYGVGYRFRESA

Specific function: Member of a two-component regulatory system ChvG(ExoS)/ChvI involved in regulating the production of succinoglycan [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788394, Length=238, Percent_Identity=38.2352941176471, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1790860, Length=237, Percent_Identity=36.2869198312236, Blast_Score=158, Evalue=3e-40,
Organism=Escherichia coli, GI2367329, Length=234, Percent_Identity=38.034188034188, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI1786599, Length=236, Percent_Identity=35.5932203389831, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1790863, Length=242, Percent_Identity=34.7107438016529, Blast_Score=127, Evalue=4e-31,
Organism=Escherichia coli, GI1789809, Length=241, Percent_Identity=34.4398340248963, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1789402, Length=236, Percent_Identity=30.5084745762712, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI87082012, Length=235, Percent_Identity=33.6170212765957, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787229, Length=233, Percent_Identity=31.7596566523605, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790552, Length=232, Percent_Identity=30.6034482758621, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI145693140, Length=246, Percent_Identity=31.3008130081301, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1786911, Length=242, Percent_Identity=30.5785123966942, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787375, Length=234, Percent_Identity=28.6324786324786, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786784, Length=234, Percent_Identity=28.2051282051282, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790299, Length=101, Percent_Identity=35.6435643564356, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1788550, Length=101, Percent_Identity=32.6732673267327, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27164; Mature: 27164

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTIALVDDDRNILTSVSIALEAEGYKVETYTDGASALEGLVARPPHLAIFDIKMPRMDG
CCEEEEEECCCHHHHHEEEEEECCCEEEEEECCHHHHHHHHHCCCCCEEEEEEECCCCCH
MELLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRAA
HHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHC
NREAAAGGPGPVKNADTPSRSLERGQLVMDQERHTCTWKNESVTLTVTEFLILHALAQRP
CCCCCCCCCCCCCCCCCCHHHHHCCCEEECCCCCEEEECCCEEEEEHHHHHHHHHHHHCC
GVVKSRDALMDAAYDEQVYVDDRTIDSHIKRLRKKFKMVDNDFDMIETLYGVGYRFRESA
CCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEECCCC
>Mature Secondary Structure
MQTIALVDDDRNILTSVSIALEAEGYKVETYTDGASALEGLVARPPHLAIFDIKMPRMDG
CCEEEEEECCCHHHHHEEEEEECCCEEEEEECCHHHHHHHHHCCCCCEEEEEEECCCCCH
MELLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRAA
HHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHC
NREAAAGGPGPVKNADTPSRSLERGQLVMDQERHTCTWKNESVTLTVTEFLILHALAQRP
CCCCCCCCCCCCCCCCCCHHHHHCCCEEECCCCCEEEECCCEEEEEHHHHHHHHHHHHCC
GVVKSRDALMDAAYDEQVYVDDRTIDSHIKRLRKKFKMVDNDFDMIETLYGVGYRFRESA
CCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7559334 [H]