Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 150398389

GI number: 150398389

Start: 3370334

End: 3370993

Strand: Reverse

Name: yggS [C]

Synonym: Smed_3197

Alternate gene names: 150398389

Gene position: 3370993-3370334 (Counterclockwise)

Preceding gene: 150398393

Following gene: 150398388

Centisome position: 89.13

GC content: 62.12

Gene sequence:

>660_bases
ATGGAAGTCGAAGAGCGGTTGAACGATGTCCTGAGCCGGATTCGCAAGAGCGAGAAATCGGCAAACCGATCGGAGAATGC
CGTCAGCCTGGTCGCCGTTTCCAAAACCTTCGACGCAGACTCGATAGGCCCGGTGATCGACGCCGGGCAGCGCGTGTTCG
GCGAGAATCGTGTGCAGGAGGCGCAATCGAAATGGCCGGCGCTGAAGGGCCGGACGCCGGACATCGAGCTGCACCTGATC
GGCCCGCTGCAATCCAACAAGGCTGCCGATGCCGTCGCGCTTTTCGACGTCATCGAGACCGTGGATCGGGAAAAGATCGC
CCGCGCCCTCGCCGCCGAAATGAAGCGCCAGGAACGGGAGATCCGCCTCTATGTTCAGGTGAACACCGGACTTGAGCCGC
AAAAAGCGGGTATCGCCCCTGAAGGCACCGGTGCCTTCGTCACCTTCTGCCGCGAGGAACTGGGCCTCGATATCGAAGGG
CTCATGTGCATTCCACCGCTCGACGAAAACCCGGGGCCACATTTTGCGCTGCTCGCAAAGCTCGCCTCCCAGTGCGGCCT
TTCCAGGCTCTCCATGGGCATGTCCGGTGATTTCGAGACTGCGATCGCCTTCGGCGCTACCAGCGTGCGGGTCGGTTCCG
CCATTTTCGGAGCGCGCTGA

Upstream 100 bases:

>100_bases
CCGGCAAGCCGCTCCGCTTGCCCACGGACTTGGCAAGCAGCGCGAGATTCAATAAGCCGCAAGGCGACGATGTCGAGACG
ATCTGCATAGGAGAATAGCG

Downstream 100 bases:

>100_bases
GCTCCTGTCCCCTCACCCTTTCGTCGGGGTTCCCGTTTACGTCCGTTCGCCTATCTTTCGAGGCGGAGGAGCCGGGAATT
TTGTCCGGAAGAGCGAGTGG

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MEVEERLNDVLSRIRKSEKSANRSENAVSLVAVSKTFDADSIGPVIDAGQRVFGENRVQEAQSKWPALKGRTPDIELHLI
GPLQSNKAADAVALFDVIETVDREKIARALAAEMKRQEREIRLYVQVNTGLEPQKAGIAPEGTGAFVTFCREELGLDIEG
LMCIPPLDENPGPHFALLAKLASQCGLSRLSMGMSGDFETAIAFGATSVRVGSAIFGAR

Sequences:

>Translated_219_residues
MEVEERLNDVLSRIRKSEKSANRSENAVSLVAVSKTFDADSIGPVIDAGQRVFGENRVQEAQSKWPALKGRTPDIELHLI
GPLQSNKAADAVALFDVIETVDREKIARALAAEMKRQEREIRLYVQVNTGLEPQKAGIAPEGTGAFVTFCREELGLDIEG
LMCIPPLDENPGPHFALLAKLASQCGLSRLSMGMSGDFETAIAFGATSVRVGSAIFGAR
>Mature_219_residues
MEVEERLNDVLSRIRKSEKSANRSENAVSLVAVSKTFDADSIGPVIDAGQRVFGENRVQEAQSKWPALKGRTPDIELHLI
GPLQSNKAADAVALFDVIETVDREKIARALAAEMKRQEREIRLYVQVNTGLEPQKAGIAPEGTGAFVTFCREELGLDIEG
LMCIPPLDENPGPHFALLAKLASQCGLSRLSMGMSGDFETAIAFGATSVRVGSAIFGAR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=210, Percent_Identity=39.0476190476191, Blast_Score=110, Evalue=1e-24,
Organism=Escherichia coli, GI1789321, Length=228, Percent_Identity=36.4035087719298, Blast_Score=117, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI17533025, Length=219, Percent_Identity=40.6392694063927, Blast_Score=117, Evalue=5e-27,
Organism=Saccharomyces cerevisiae, GI6319435, Length=221, Percent_Identity=37.5565610859729, Blast_Score=95, Evalue=8e-21,
Organism=Drosophila melanogaster, GI45550861, Length=239, Percent_Identity=38.4937238493724, Blast_Score=121, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 23666; Mature: 23666

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVEERLNDVLSRIRKSEKSANRSENAVSLVAVSKTFDADSIGPVIDAGQRVFGENRVQE
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
AQSKWPALKGRTPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAAEMKRQERE
HHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCE
IRLYVQVNTGLEPQKAGIAPEGTGAFVTFCREELGLDIEGLMCIPPLDENPGPHFALLAK
EEEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHH
LASQCGLSRLSMGMSGDFETAIAFGATSVRVGSAIFGAR
HHHHHCHHHHHCCCCCCHHHHHHHCCHHHHHCCHHHCCC
>Mature Secondary Structure
MEVEERLNDVLSRIRKSEKSANRSENAVSLVAVSKTFDADSIGPVIDAGQRVFGENRVQE
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
AQSKWPALKGRTPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAAEMKRQERE
HHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCE
IRLYVQVNTGLEPQKAGIAPEGTGAFVTFCREELGLDIEGLMCIPPLDENPGPHFALLAK
EEEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHH
LASQCGLSRLSMGMSGDFETAIAFGATSVRVGSAIFGAR
HHHHHCHHHHHCCCCCCHHHHHHHCCHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]