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The map label for this gene is ycjP [C]

Identifier: 150398360

GI number: 150398360

Start: 3329970

End: 3330851

Strand: Reverse

Name: ycjP [C]

Synonym: Smed_3168

Alternate gene names: 150398360

Gene position: 3330851-3329970 (Counterclockwise)

Preceding gene: 150398361

Following gene: 150398359

Centisome position: 88.07

GC content: 59.75

Gene sequence:

>882_bases
ATGGGCGCTCCCAGTCCCGAGAACGTCATCTCGCACAACCGCCTGACGCGGGCGCTGATCTATTCGGCGCTGATCCTTTT
CGCACTCTATTCGTTGCTGCCGCTTTACGTGATGGTGGTGAATTCCCTGAAGCCCCTCGAAGAGATCCGTCAGGGCGGCA
TGTTGAACCTGCCCCGGACCTGGACCATCGAACCGTGGCTCTCCGCGTGGTCGACGGCGCAGATCGGCGTTGAGCCGACG
GGCCTTCGCCCCTTCTTCATCAACTCGATCCTGATGGTCGTTCCGGCCGTGGCGATCTCAACGATAATCGGCGCGCTTAA
CGGCTATGTACTGACCAAGTGGCGGTTCCCCGGCGCCAACATCGTCTTCGGCATGCTGCTTCTTTCCTGCTTCATCCCGT
TCCAGATCGTCCTGATCCCGATGGCGCGGATTCTCGGTATCCTCGGTATCGCCGGTTCGATCTGGGGTCTGATCCTCGTC
CATGTGGTCTACGGCATCGGCTTCACGACGCTCTATTTCCGCAACTACTATGAGGCCTTTCCAACCGAGCTCGTGCGGGC
GGCGCAGATCGATGGTGCGAGCTTCTTCCAGATTTTCCGGCGGATCCTGCTGCCGTCTTCGGGGCCGATCATCGTCGTCT
CGGTCATCTGGCAGTTCACCAATATCTGGAACGATTTCCTGTTCGGCGCCTCGTTCTCCGGTCCTTATTCGACGCCCATG
ACGGTGGCGCTCAACAACCTCGTGAGCTCGTCGACAGGCGTCAAGGAATACAACGTCCATTTCGCCGGTGCGATCCTCGC
CGCTCTGCCAACGCTCATCGTCTACATCGTATCCGGCCGCTACTTCGTCCGCGGGCTGATGTCCGGCGCCGTGAAAGGAT
AA

Upstream 100 bases:

>100_bases
AGATGGCGATCGGCGCCTCGTCGGCGATCATCATGCTGGTGATGATCTTCTCGATCATCGTCCCCTATCTCTATTCCGAA
ATCCGGGGAGGAAAAGGCTG

Downstream 100 bases:

>100_bases
GCCCATGTCATTCCTGAAGATCACCAATCTACGCAAATCCTACGGCGCTCTCGAAATCCTCAAGGACATCAATCTGGAGA
TAGACGAAGGCGGTTTTCTG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MGAPSPENVISHNRLTRALIYSALILFALYSLLPLYVMVVNSLKPLEEIRQGGMLNLPRTWTIEPWLSAWSTAQIGVEPT
GLRPFFINSILMVVPAVAISTIIGALNGYVLTKWRFPGANIVFGMLLLSCFIPFQIVLIPMARILGILGIAGSIWGLILV
HVVYGIGFTTLYFRNYYEAFPTELVRAAQIDGASFFQIFRRILLPSSGPIIVVSVIWQFTNIWNDFLFGASFSGPYSTPM
TVALNNLVSSSTGVKEYNVHFAGAILAALPTLIVYIVSGRYFVRGLMSGAVKG

Sequences:

>Translated_293_residues
MGAPSPENVISHNRLTRALIYSALILFALYSLLPLYVMVVNSLKPLEEIRQGGMLNLPRTWTIEPWLSAWSTAQIGVEPT
GLRPFFINSILMVVPAVAISTIIGALNGYVLTKWRFPGANIVFGMLLLSCFIPFQIVLIPMARILGILGIAGSIWGLILV
HVVYGIGFTTLYFRNYYEAFPTELVRAAQIDGASFFQIFRRILLPSSGPIIVVSVIWQFTNIWNDFLFGASFSGPYSTPM
TVALNNLVSSSTGVKEYNVHFAGAILAALPTLIVYIVSGRYFVRGLMSGAVKG
>Mature_292_residues
GAPSPENVISHNRLTRALIYSALILFALYSLLPLYVMVVNSLKPLEEIRQGGMLNLPRTWTIEPWLSAWSTAQIGVEPTG
LRPFFINSILMVVPAVAISTIIGALNGYVLTKWRFPGANIVFGMLLLSCFIPFQIVLIPMARILGILGIAGSIWGLILVH
VVYGIGFTTLYFRNYYEAFPTELVRAAQIDGASFFQIFRRILLPSSGPIIVVSVIWQFTNIWNDFLFGASFSGPYSTPMT
VALNNLVSSSTGVKEYNVHFAGAILAALPTLIVYIVSGRYFVRGLMSGAVKG

Specific function: Probably part of a binding-protein-dependent transport system PH1214/15/16. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=284, Percent_Identity=27.112676056338, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1789860, Length=270, Percent_Identity=25.5555555555556, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1787368, Length=148, Percent_Identity=28.3783783783784, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790464, Length=211, Percent_Identity=29.3838862559242, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32187; Mature: 32055

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAPSPENVISHNRLTRALIYSALILFALYSLLPLYVMVVNSLKPLEEIRQGGMLNLPRT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCC
WTIEPWLSAWSTAQIGVEPTGLRPFFINSILMVVPAVAISTIIGALNGYVLTKWRFPGAN
EEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHH
IVFGMLLLSCFIPFQIVLIPMARILGILGIAGSIWGLILVHVVYGIGFTTLYFRNYYEAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PTELVRAAQIDGASFFQIFRRILLPSSGPIIVVSVIWQFTNIWNDFLFGASFSGPYSTPM
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
TVALNNLVSSSTGVKEYNVHFAGAILAALPTLIVYIVSGRYFVRGLMSGAVKG
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
GAPSPENVISHNRLTRALIYSALILFALYSLLPLYVMVVNSLKPLEEIRQGGMLNLPRT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCC
WTIEPWLSAWSTAQIGVEPTGLRPFFINSILMVVPAVAISTIIGALNGYVLTKWRFPGAN
EEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHH
IVFGMLLLSCFIPFQIVLIPMARILGILGIAGSIWGLILVHVVYGIGFTTLYFRNYYEAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PTELVRAAQIDGASFFQIFRRILLPSSGPIIVVSVIWQFTNIWNDFLFGASFSGPYSTPM
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
TVALNNLVSSSTGVKEYNVHFAGAILAALPTLIVYIVSGRYFVRGLMSGAVKG
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]