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The map label for this gene is ydfH [C]

Identifier: 150398337

GI number: 150398337

Start: 3295999

End: 3296661

Strand: Direct

Name: ydfH [C]

Synonym: Smed_3145

Alternate gene names: 150398337

Gene position: 3295999-3296661 (Clockwise)

Preceding gene: 150398336

Following gene: 150398338

Centisome position: 87.15

GC content: 57.16

Gene sequence:

>663_bases
ATGTCGGCGCCATTGCGGCAGATCGCATATGAGAATTTCAAGAACAGGCTTTTTGACCGGACATTGATTCCGGGGCGCTT
TCTGTCGCAAAGAGAGCTGTGCGACATACTCGAAAGCCCGATGGGGGCTGTCCGAGAAGCGTTGAAGCGGCTTGAAGCCG
AAGGCTTGATCAACATTTTGCCCCAGCGCGGCGTGCAGATCACCGATATCAACCTGAGCCTGATTAATGAAGCCTTCCAG
TTCCGGCTTCTCATCGAGCAGGAAGCGGCGCGAAAAATGGCGGGGTCGCCGAATCGTGCTGAGCTGGCGGAATTGCGCGA
GCGGACCCAGAACATCAGATCGCGGGCAGAGCGGGCCGATGCCTCTGACCAGACCTATCTGAAGGATGGGCTGGAGGTCG
ACCTGGCGCTTCACGATATGCTGGTCGCTCATTTCGATAACTCGCTGATCAGCGGCACCCATAGGATAATCCAGGACCGT
GTCCGGCTGATCCGCTCCAACAAGAACTACACCACGTCACGATTGGTCGATGCCATGTCGGAGCATCTGGCGATTATCGA
CGCGCTGCTGGCGACGGATGAAAACGCTGCGGTCGCCGCATTGAAGTCTCATCTCACCACATCATGGCGGCGCGCCCTTG
GACATGAGGATCTGTCATCGTGA

Upstream 100 bases:

>100_bases
GGATCAAAACATCTACAGCGCCGTGCGTCTTATCAGACGCACATTGACTAAAATCTTACTAGGTACTAGGTAAGTACTTA
GATGTCGGGAAGGAGCGGGG

Downstream 100 bases:

>100_bases
ACAAGCCGAATGTCCTGTTCATATTCTCTGATCAGCACGCGCAGAAAGTAGCGGGCTGTTATGGCGATGATGTCGTCCGA
ACGCCCAATATCGACCGGCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; GntR Family Regulatory Protein; Transcriptional Regulator Gntr Family; Transcriptional Regulator GntR Family Protein; HTH-Type Transcriptional Regulator; GntR Domain-Containing Protein; Transcriptional Regulator Protein GntR Family; Transcriptional Regulator GntR-Type; Transcriptional Regulator Protein

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MSAPLRQIAYENFKNRLFDRTLIPGRFLSQRELCDILESPMGAVREALKRLEAEGLINILPQRGVQITDINLSLINEAFQ
FRLLIEQEAARKMAGSPNRAELAELRERTQNIRSRAERADASDQTYLKDGLEVDLALHDMLVAHFDNSLISGTHRIIQDR
VRLIRSNKNYTTSRLVDAMSEHLAIIDALLATDENAAVAALKSHLTTSWRRALGHEDLSS

Sequences:

>Translated_220_residues
MSAPLRQIAYENFKNRLFDRTLIPGRFLSQRELCDILESPMGAVREALKRLEAEGLINILPQRGVQITDINLSLINEAFQ
FRLLIEQEAARKMAGSPNRAELAELRERTQNIRSRAERADASDQTYLKDGLEVDLALHDMLVAHFDNSLISGTHRIIQDR
VRLIRSNKNYTTSRLVDAMSEHLAIIDALLATDENAAVAALKSHLTTSWRRALGHEDLSS
>Mature_219_residues
SAPLRQIAYENFKNRLFDRTLIPGRFLSQRELCDILESPMGAVREALKRLEAEGLINILPQRGVQITDINLSLINEAFQF
RLLIEQEAARKMAGSPNRAELAELRERTQNIRSRAERADASDQTYLKDGLEVDLALHDMLVAHFDNSLISGTHRIIQDRV
RLIRSNKNYTTSRLVDAMSEHLAIIDALLATDENAAVAALKSHLTTSWRRALGHEDLSS

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24871; Mature: 24740

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPLRQIAYENFKNRLFDRTLIPGRFLSQRELCDILESPMGAVREALKRLEAEGLINIL
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
PQRGVQITDINLSLINEAFQFRLLIEQEAARKMAGSPNRAELAELRERTQNIRSRAERAD
CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
ASDQTYLKDGLEVDLALHDMLVAHFDNSLISGTHRIIQDRVRLIRSNKNYTTSRLVDAMS
CCCHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
EHLAIIDALLATDENAAVAALKSHLTTSWRRALGHEDLSS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SAPLRQIAYENFKNRLFDRTLIPGRFLSQRELCDILESPMGAVREALKRLEAEGLINIL
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
PQRGVQITDINLSLINEAFQFRLLIEQEAARKMAGSPNRAELAELRERTQNIRSRAERAD
CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
ASDQTYLKDGLEVDLALHDMLVAHFDNSLISGTHRIIQDRVRLIRSNKNYTTSRLVDAMS
CCCHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
EHLAIIDALLATDENAAVAALKSHLTTSWRRALGHEDLSS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA