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The map label for this gene is yecS [C]

Identifier: 150398331

GI number: 150398331

Start: 3287104

End: 3287784

Strand: Direct

Name: yecS [C]

Synonym: Smed_3137

Alternate gene names: 150398331

Gene position: 3287104-3287784 (Clockwise)

Preceding gene: 150398330

Following gene: 150398332

Centisome position: 86.92

GC content: 63.58

Gene sequence:

>681_bases
TTGCCCCATTGGCTTCAATTGATGGCGGATTCGTTGCCGGCCCTGCTCTGGGCGGGGCTGATCTTCACGATCCCGCTGAC
GCTCCTCTCCTTCACCCTCGGTCTGGCTCTCGGCCTCGTGACCGCCGTCGTCCGGCTTTTCGCCCCGGCTCCTTTCGCGG
TCGTGGCGCGATTCTATGTCTGGGTGATCCGCGGCACGCCGCTGCTGGTGCAGCTCTTCGTCATCTTCTACGGCCTGCCG
AGCATGGGCATCCTGCTCGACGCCTTTCCTGCAGCGCTGATCGGCTTCACGCTCAATATCGGCGCCTACAGTTCCGAAAT
CATCCGCGCGGTAATTTCGTCTGTTCCGCGGGGACAGTGGGAAGCGGCCTATTCGATCGGCCTGAGCTGGAGCCAGGCGA
TGCGCCGGACGATCCTTCCGCAGGCGGGCCGCGTCGCCGTTCCGCCGCTGTCGAACACCTTCATCTCGCTCGTCAAGGAT
ACGTCGCTCGCAGCGGCGATAACGGTGCCGGAGCTGTTCCAGACGGCGCAGCGCATCGTCGCGACCAGCTATGAACCCTT
GATCCTCTACATCGAGGCCGCCCTGATCTATCTTGTCATGAGTTCCGTTCTTTCGGCGCTGCAGGGGAAACTGGAGCAGC
GCTTCGCCCGCTATGGCGGCTTCCTGGAGGCGCGCGCATGA

Upstream 100 bases:

>100_bases
GTTGCAGGGAACGTGGGCTTCACACCCATGCCCATCCTGCTTATGAATCGCGATCCGTCCCGGCACCCGGGACGGATCGC
GCGTTTTGAAAGGTGCTCCC

Downstream 100 bases:

>100_bases
TCGAGCTCTCCCACATCGTCAAGCGCTTCGGCACCAACACCGTGCTGAATGACATCAGCGTCTCGCTCGCGGAGGGCAGC
GTGACCGCACTCGTCGGACC

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MPHWLQLMADSLPALLWAGLIFTIPLTLLSFTLGLALGLVTAVVRLFAPAPFAVVARFYVWVIRGTPLLVQLFVIFYGLP
SMGILLDAFPAALIGFTLNIGAYSSEIIRAVISSVPRGQWEAAYSIGLSWSQAMRRTILPQAGRVAVPPLSNTFISLVKD
TSLAAAITVPELFQTAQRIVATSYEPLILYIEAALIYLVMSSVLSALQGKLEQRFARYGGFLEARA

Sequences:

>Translated_226_residues
MPHWLQLMADSLPALLWAGLIFTIPLTLLSFTLGLALGLVTAVVRLFAPAPFAVVARFYVWVIRGTPLLVQLFVIFYGLP
SMGILLDAFPAALIGFTLNIGAYSSEIIRAVISSVPRGQWEAAYSIGLSWSQAMRRTILPQAGRVAVPPLSNTFISLVKD
TSLAAAITVPELFQTAQRIVATSYEPLILYIEAALIYLVMSSVLSALQGKLEQRFARYGGFLEARA
>Mature_225_residues
PHWLQLMADSLPALLWAGLIFTIPLTLLSFTLGLALGLVTAVVRLFAPAPFAVVARFYVWVIRGTPLLVQLFVIFYGLPS
MGILLDAFPAALIGFTLNIGAYSSEIIRAVISSVPRGQWEAAYSIGLSWSQAMRRTILPQAGRVAVPPLSNTFISLVKDT
SLAAAITVPELFQTAQRIVATSYEPLILYIEAALIYLVMSSVLSALQGKLEQRFARYGGFLEARA

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=217, Percent_Identity=53.4562211981567, Blast_Score=217, Evalue=4e-58,
Organism=Escherichia coli, GI1787030, Length=202, Percent_Identity=37.1287128712871, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1788645, Length=230, Percent_Identity=33.4782608695652, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1786873, Length=216, Percent_Identity=35.6481481481481, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787086, Length=218, Percent_Identity=29.8165137614679, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1788646, Length=220, Percent_Identity=28.6363636363636, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1787087, Length=226, Percent_Identity=28.7610619469027, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI87082239, Length=208, Percent_Identity=32.2115384615385, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786874, Length=212, Percent_Identity=25.9433962264151, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI48994930, Length=134, Percent_Identity=35.8208955223881, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24602; Mature: 24470

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHWLQLMADSLPALLWAGLIFTIPLTLLSFTLGLALGLVTAVVRLFAPAPFAVVARFYV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
WVIRGTPLLVQLFVIFYGLPSMGILLDAFPAALIGFTLNIGAYSSEIIRAVISSVPRGQW
HHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
EAAYSIGLSWSQAMRRTILPQAGRVAVPPLSNTFISLVKDTSLAAAITVPELFQTAQRIV
HHHHHHCCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATSYEPLILYIEAALIYLVMSSVLSALQGKLEQRFARYGGFLEARA
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure 
PHWLQLMADSLPALLWAGLIFTIPLTLLSFTLGLALGLVTAVVRLFAPAPFAVVARFYV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
WVIRGTPLLVQLFVIFYGLPSMGILLDAFPAALIGFTLNIGAYSSEIIRAVISSVPRGQW
HHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
EAAYSIGLSWSQAMRRTILPQAGRVAVPPLSNTFISLVKDTSLAAAITVPELFQTAQRIV
HHHHHHCCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATSYEPLILYIEAALIYLVMSSVLSALQGKLEQRFARYGGFLEARA
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]