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The map label for this gene is yfgC [C]

Identifier: 150398304

GI number: 150398304

Start: 3256627

End: 3258138

Strand: Direct

Name: yfgC [C]

Synonym: Smed_3110

Alternate gene names: 150398304

Gene position: 3256627-3258138 (Clockwise)

Preceding gene: 150398303

Following gene: 150398312

Centisome position: 86.11

GC content: 63.89

Gene sequence:

>1512_bases
ATGATAAGGCAGGCAGTCAAGAATGACTGGTTTCCGCGGCGGCATGGAACCGTGCGCGCACGAGCGTTGGTTGTATTGGC
GGCCACGACGCTGGTCGCCGGCTGCCAGTCGGTAATCGAACAGACCTACGAGCCGACCGTTTCGCCATCCTCCAATCCGC
AGATCGTCGAAGAGGTGCAGAAGAACGATCCGCGTGCCCAACTCGGCGCACGCGAACATCCGCGCATCGTTGCGAGCTAT
GGCGGTGAGTACCGCGACGCCAAGACAGAGCGGCTGGTCGCCCGGATCACCGGCGCCCTGACGGCCGTTTCGGAAAATCC
CCAGCAATCCTACCGCATCACCATTCTCAATTCGCCGGCGATCAACGCTTTCGCGCTCCCCGGCGGCTATCTCTACGTCA
CGCGGGGTCTGCTGGCGCTTGCCAACGACGCCTCTGAAGTGGCAGCCGTGCTCTCGCACGAGATGGCCCATGTGACGGCC
AATCACGGCATTCAGCGACAGCAGCGCGAGGAGGCGGAGGTGATCGCCAGCCGCGTCGTTTCCGAGGTGCTGTCTTCCGA
TCTCGCCGGCAAACAGGCGCTTGCCCGGGGTAAGCTGCGCCTCGCGGCCTTTTCACGCAATCAGGAACTGCAGGCGGACG
TGATCGGCGTCCGCATGCTGGGAGAAGCGGGCTACGATCCCTATGCGGCGGCACGCTTTCTCGATTCCATGGCTGCCTAT
AGCCGCTTCAGTGCGGTCGATCCGGAGGCAGACCAGAGCCTGGACTTTCTGTCGAGCCACCCTAACGCGCCGCAGCGCGT
CGACCTCGCGCGACGGCATGCGCGTGCCTTTGGTCTCGAGGGCACAAGCGGCGATCGCGGGCGCGACTACTATCTCGCGG
GAATCGACGGTATCCTCTATGGCGACAGTCCGCAGGAAGGCTATGTCCGTGGACAGACCTTCCTGCACGGCCAGCTCGGC
ATACGCTTCGACGTGCCCACAGGTTTTCAGATCGACAACAAGGCAGAGGCCGTACTTGCCACGGGTCCTGGTGAAGTGGC
CGTCCGTTTCGACGGCATCGCCGATACGAGCGGGCGCAACCTGACCGATTACATCGCCAGCGGCTGGGTGACCGGCCTCA
AGCCCGATACGATCCGTTCCATCCGGGTCAATGGTCTGGAGGCCGCGACGGCGCGCGCCTCCGCCGACCGCTGGGATTTC
GACGTCACGGTGATCAGGCTCGGCGAGCGCATATACCGCTTTCTGACGGCCGTTCCAAAGGGTTCCAGCGCACTGCAGCC
GACAGCGGACCAGCTGCGCACGTCCTTCCGACGGATGACGTCTGGCGAAGTTCAGTCGCTGAAGCCGCTGCGTGTCCGGG
TGGTCACGGTCCGGTCCGGCGACACGACCGCGACACTGGCGGCGCGCATGATGGGCACCGACCGGAAGCTCGACCTCTTT
CGCCTGATCAATGCGATGCAGATCACCTCCACCGTCAGACCGGGCGACAAGGTGAAGATCATTTCCGAGTGA

Upstream 100 bases:

>100_bases
CCGGTGCATCGCATCCGGCTGAAAAAGTAGGACTTTTCGCCGATTGCGATGAATGGCTGTAAGCCGCGGGTCGCGCCGGC
GGATGGGAACGGGCTGAGGC

Downstream 100 bases:

>100_bases
GACGGCTACCGCATATTTCCTTTAATCGGATCCGATTAAAGGACAAAAAGATGCAGCAGATCAAAGTACTACAGCGACCT
TTGTGCGTCCGATGAAGCAC

Product: peptidase M48 Ste24p

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 503; Mature: 503

Protein sequence:

>503_residues
MIRQAVKNDWFPRRHGTVRARALVVLAATTLVAGCQSVIEQTYEPTVSPSSNPQIVEEVQKNDPRAQLGAREHPRIVASY
GGEYRDAKTERLVARITGALTAVSENPQQSYRITILNSPAINAFALPGGYLYVTRGLLALANDASEVAAVLSHEMAHVTA
NHGIQRQQREEAEVIASRVVSEVLSSDLAGKQALARGKLRLAAFSRNQELQADVIGVRMLGEAGYDPYAAARFLDSMAAY
SRFSAVDPEADQSLDFLSSHPNAPQRVDLARRHARAFGLEGTSGDRGRDYYLAGIDGILYGDSPQEGYVRGQTFLHGQLG
IRFDVPTGFQIDNKAEAVLATGPGEVAVRFDGIADTSGRNLTDYIASGWVTGLKPDTIRSIRVNGLEAATARASADRWDF
DVTVIRLGERIYRFLTAVPKGSSALQPTADQLRTSFRRMTSGEVQSLKPLRVRVVTVRSGDTTATLAARMMGTDRKLDLF
RLINAMQITSTVRPGDKVKIISE

Sequences:

>Translated_503_residues
MIRQAVKNDWFPRRHGTVRARALVVLAATTLVAGCQSVIEQTYEPTVSPSSNPQIVEEVQKNDPRAQLGAREHPRIVASY
GGEYRDAKTERLVARITGALTAVSENPQQSYRITILNSPAINAFALPGGYLYVTRGLLALANDASEVAAVLSHEMAHVTA
NHGIQRQQREEAEVIASRVVSEVLSSDLAGKQALARGKLRLAAFSRNQELQADVIGVRMLGEAGYDPYAAARFLDSMAAY
SRFSAVDPEADQSLDFLSSHPNAPQRVDLARRHARAFGLEGTSGDRGRDYYLAGIDGILYGDSPQEGYVRGQTFLHGQLG
IRFDVPTGFQIDNKAEAVLATGPGEVAVRFDGIADTSGRNLTDYIASGWVTGLKPDTIRSIRVNGLEAATARASADRWDF
DVTVIRLGERIYRFLTAVPKGSSALQPTADQLRTSFRRMTSGEVQSLKPLRVRVVTVRSGDTTATLAARMMGTDRKLDLF
RLINAMQITSTVRPGDKVKIISE
>Mature_503_residues
MIRQAVKNDWFPRRHGTVRARALVVLAATTLVAGCQSVIEQTYEPTVSPSSNPQIVEEVQKNDPRAQLGAREHPRIVASY
GGEYRDAKTERLVARITGALTAVSENPQQSYRITILNSPAINAFALPGGYLYVTRGLLALANDASEVAAVLSHEMAHVTA
NHGIQRQQREEAEVIASRVVSEVLSSDLAGKQALARGKLRLAAFSRNQELQADVIGVRMLGEAGYDPYAAARFLDSMAAY
SRFSAVDPEADQSLDFLSSHPNAPQRVDLARRHARAFGLEGTSGDRGRDYYLAGIDGILYGDSPQEGYVRGQTFLHGQLG
IRFDVPTGFQIDNKAEAVLATGPGEVAVRFDGIADTSGRNLTDYIASGWVTGLKPDTIRSIRVNGLEAATARASADRWDF
DVTVIRLGERIYRFLTAVPKGSSALQPTADQLRTSFRRMTSGEVQSLKPLRVRVVTVRSGDTTATLAARMMGTDRKLDLF
RLINAMQITSTVRPGDKVKIISE

Specific function: Unknown

COG id: COG4784

COG function: function code R; Putative Zn-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TPR repeat [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=192, Percent_Identity=30.2083333333333, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322940, Length=160, Percent_Identity=28.125, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR011716
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48; PF07720 TPR_3 [H]

EC number: NA

Molecular weight: Translated: 54798; Mature: 54798

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRQAVKNDWFPRRHGTVRARALVVLAATTLVAGCQSVIEQTYEPTVSPSSNPQIVEEVQ
CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
KNDPRAQLGAREHPRIVASYGGEYRDAKTERLVARITGALTAVSENPQQSYRITILNSPA
CCCCHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
INAFALPGGYLYVTRGLLALANDASEVAAVLSHEMAHVTANHGIQRQQREEAEVIASRVV
CEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
SEVLSSDLAGKQALARGKLRLAAFSRNQELQADVIGVRMLGEAGYDPYAAARFLDSMAAY
HHHHHHHCCCHHHHHHCCEEEEEECCCCCCHHHHHEEEEECCCCCCHHHHHHHHHHHHHH
SRFSAVDPEADQSLDFLSSHPNAPQRVDLARRHARAFGLEGTSGDRGRDYYLAGIDGILY
HHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEE
GDSPQEGYVRGQTFLHGQLGIRFDVPTGFQIDNKAEAVLATGPGEVAVRFDGIADTSGRN
CCCCCCCEEECCEEEEECEEEEEECCCCCEECCCCCEEEEECCCCEEEEECCCCCCCCCC
LTDYIASGWVTGLKPDTIRSIRVNGLEAATARASADRWDFDVTVIRLGERIYRFLTAVPK
HHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
GSSALQPTADQLRTSFRRMTSGEVQSLKPLRVRVVTVRSGDTTATLAARMMGTDRKLDLF
CCCCCCCCHHHHHHHHHHHCCCCHHCCCCEEEEEEEEECCCCHHHHHHHHHCCCCCHHHH
RLINAMQITSTVRPGDKVKIISE
HHHHHHHHHHCCCCCCCEEEECC
>Mature Secondary Structure
MIRQAVKNDWFPRRHGTVRARALVVLAATTLVAGCQSVIEQTYEPTVSPSSNPQIVEEVQ
CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
KNDPRAQLGAREHPRIVASYGGEYRDAKTERLVARITGALTAVSENPQQSYRITILNSPA
CCCCHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
INAFALPGGYLYVTRGLLALANDASEVAAVLSHEMAHVTANHGIQRQQREEAEVIASRVV
CEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
SEVLSSDLAGKQALARGKLRLAAFSRNQELQADVIGVRMLGEAGYDPYAAARFLDSMAAY
HHHHHHHCCCHHHHHHCCEEEEEECCCCCCHHHHHEEEEECCCCCCHHHHHHHHHHHHHH
SRFSAVDPEADQSLDFLSSHPNAPQRVDLARRHARAFGLEGTSGDRGRDYYLAGIDGILY
HHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEE
GDSPQEGYVRGQTFLHGQLGIRFDVPTGFQIDNKAEAVLATGPGEVAVRFDGIADTSGRN
CCCCCCCEEECCEEEEECEEEEEECCCCCEECCCCCEEEEECCCCEEEEECCCCCCCCCC
LTDYIASGWVTGLKPDTIRSIRVNGLEAATARASADRWDFDVTVIRLGERIYRFLTAVPK
HHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
GSSALQPTADQLRTSFRRMTSGEVQSLKPLRVRVVTVRSGDTTATLAARMMGTDRKLDLF
CCCCCCCCHHHHHHHHHHHCCCCHHCCCCEEEEEEEEECCCCHHHHHHHHHCCCCCHHHH
RLINAMQITSTVRPGDKVKIISE
HHHHHHHHHHCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]