| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
Click here to switch to the map view.
The map label for this gene is ccmA [H]
Identifier: 150398278
GI number: 150398278
Start: 3232691
End: 3233314
Strand: Direct
Name: ccmA [H]
Synonym: Smed_3084
Alternate gene names: 150398278
Gene position: 3232691-3233314 (Clockwise)
Preceding gene: 150398271
Following gene: 150398279
Centisome position: 85.48
GC content: 64.9
Gene sequence:
>624_bases ATGCGCCTGCTGGCTGAAGGATTGAGTGCGAGGCGCGGCGAGGACCTGATTTTCAAGGATATTTCGTTTGATCTGGCTGG CGGCGAGGCGCTCGTGGTGACCGGTCCGAACGGTTCCGGCAAGTCGACGCTTCTGCGCGTGCTGGCAGGCCTTCTCGGAG CGGATTCGGGCCGCGTCCGGCTGAAGGGCGGGCCCGCCGGTTTCGATCACCCGCGCGAACTCAGCCATTATCTCGGCCAC CGGAACGCAATGAAGCGTGAGCTGACGGTCGAGGAAAATCTCATCTTCTGGCAGCGCTTTCTCGGCGATTCACCCGGCGG CTCCGGAGACGGCCTCGTTGAAGCCGCCACGGCCGTGGGACTAGCCGACATCATCCACCTGCCCTTCGGCTACCTTTCCG CCGGCCAGCAGCGCCGCATGGCAATGGCGAAACTGCTCGTGGCCTATCGGCCGATCTGGCTCCTCGACGAGCCGACGGCG GCTCTCGACGTCAGCGCCGACAGGCTCTTTGCCGGGCTGGTGGCGCGCCATCTCGAACGCGGCGGGATCGTCATCGCCGC CACGCACCAGGCTCTGGGGTTCACCGGGGTTAAAAGCCTCGAAATGACGGGGTTCTTCCATTGA
Upstream 100 bases:
>100_bases GCCTTATAGATAATTTCTTGAAATCGTGCCAGACCAAGCAAGGTCCAATCGGAACTTTTTTTGCTCTGCGATAATACACG TCAAGGGAAGCTGCAAATTC
Downstream 100 bases:
>100_bases CCGCCCTCTTTCTCCGGGATCTCAAGCTTTCGGTGCGCGCCGGCGGCGGCGCGATGATCGGCGTACTTTTCTTCATGACC GTGGTCGCGGTCATCCCCTT
Product: cytochrome c biogenesis protein CcmA
Products: NA
Alternate protein names: Heme exporter protein A [H]
Number of amino acids: Translated: 207; Mature: 207
Protein sequence:
>207_residues MRLLAEGLSARRGEDLIFKDISFDLAGGEALVVTGPNGSGKSTLLRVLAGLLGADSGRVRLKGGPAGFDHPRELSHYLGH RNAMKRELTVEENLIFWQRFLGDSPGGSGDGLVEAATAVGLADIIHLPFGYLSAGQQRRMAMAKLLVAYRPIWLLDEPTA ALDVSADRLFAGLVARHLERGGIVIAATHQALGFTGVKSLEMTGFFH
Sequences:
>Translated_207_residues MRLLAEGLSARRGEDLIFKDISFDLAGGEALVVTGPNGSGKSTLLRVLAGLLGADSGRVRLKGGPAGFDHPRELSHYLGH RNAMKRELTVEENLIFWQRFLGDSPGGSGDGLVEAATAVGLADIIHLPFGYLSAGQQRRMAMAKLLVAYRPIWLLDEPTA ALDVSADRLFAGLVARHLERGGIVIAATHQALGFTGVKSLEMTGFFH >Mature_207_residues MRLLAEGLSARRGEDLIFKDISFDLAGGEALVVTGPNGSGKSTLLRVLAGLLGADSGRVRLKGGPAGFDHPRELSHYLGH RNAMKRELTVEENLIFWQRFLGDSPGGSGDGLVEAATAVGLADIIHLPFGYLSAGQQRRMAMAKLLVAYRPIWLLDEPTA ALDVSADRLFAGLVARHLERGGIVIAATHQALGFTGVKSLEMTGFFH
Specific function: Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system [H]
COG id: COG4133
COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI46592964, Length=182, Percent_Identity=31.3186813186813, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI46592978, Length=182, Percent_Identity=31.3186813186813, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI46592971, Length=182, Percent_Identity=31.3186813186813, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI46592898, Length=182, Percent_Identity=31.3186813186813, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI46592915, Length=182, Percent_Identity=31.3186813186813, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI46592956, Length=182, Percent_Identity=31.3186813186813, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI9955968, Length=193, Percent_Identity=32.1243523316062, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI9955966, Length=193, Percent_Identity=32.1243523316062, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI45243524, Length=193, Percent_Identity=32.1243523316062, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI215820660, Length=182, Percent_Identity=29.1208791208791, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI20143975, Length=182, Percent_Identity=29.1208791208791, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI27436953, Length=183, Percent_Identity=27.8688524590164, Blast_Score=75, Evalue=3e-14, Organism=Homo sapiens, GI6005701, Length=187, Percent_Identity=28.3422459893048, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI27477115, Length=183, Percent_Identity=26.775956284153, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI9955963, Length=183, Percent_Identity=31.6939890710383, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI116734710, Length=173, Percent_Identity=28.9017341040462, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI11967969, Length=185, Percent_Identity=30.2702702702703, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI171184400, Length=206, Percent_Identity=28.6407766990291, Blast_Score=64, Evalue=8e-11, Organism=Escherichia coli, GI87082064, Length=200, Percent_Identity=40, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1788761, Length=195, Percent_Identity=32.3076923076923, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1790739, Length=197, Percent_Identity=31.9796954314721, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1790544, Length=190, Percent_Identity=30, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1788165, Length=184, Percent_Identity=30.9782608695652, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790467, Length=179, Percent_Identity=32.4022346368715, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1787089, Length=204, Percent_Identity=31.3725490196078, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787029, Length=197, Percent_Identity=30.4568527918782, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI87081782, Length=187, Percent_Identity=28.8770053475936, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI87082267, Length=152, Percent_Identity=30.9210526315789, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1789672, Length=196, Percent_Identity=29.0816326530612, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1786253, Length=174, Percent_Identity=31.6091954022989, Blast_Score=71, Evalue=4e-14, Organism=Escherichia coli, GI1786698, Length=184, Percent_Identity=32.6086956521739, Blast_Score=70, Evalue=8e-14, Organism=Escherichia coli, GI1787105, Length=180, Percent_Identity=31.6666666666667, Blast_Score=68, Evalue=4e-13, Organism=Escherichia coli, GI1787041, Length=168, Percent_Identity=32.1428571428571, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787370, Length=150, Percent_Identity=32, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI48995001, Length=182, Percent_Identity=27.4725274725275, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1786803, Length=173, Percent_Identity=30.635838150289, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1787547, Length=191, Percent_Identity=27.7486910994764, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI48994943, Length=192, Percent_Identity=28.125, Blast_Score=62, Evalue=2e-11, Organism=Escherichia coli, GI1786563, Length=173, Percent_Identity=30.0578034682081, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1787182, Length=154, Percent_Identity=30.5194805194805, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1788210, Length=184, Percent_Identity=32.6086956521739, Blast_Score=61, Evalue=4e-11, Organism=Escherichia coli, GI1787112, Length=194, Percent_Identity=28.8659793814433, Blast_Score=61, Evalue=6e-11, Organism=Escherichia coli, GI87081791, Length=186, Percent_Identity=31.1827956989247, Blast_Score=60, Evalue=9e-11, Organism=Escherichia coli, GI87081834, Length=181, Percent_Identity=29.2817679558011, Blast_Score=60, Evalue=1e-10, Organism=Caenorhabditis elegans, GI212646699, Length=184, Percent_Identity=29.3478260869565, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71992285, Length=184, Percent_Identity=29.3478260869565, Blast_Score=71, Evalue=3e-13, Organism=Caenorhabditis elegans, GI25146777, Length=184, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI115533608, Length=181, Percent_Identity=25.9668508287293, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193202349, Length=167, Percent_Identity=31.1377245508982, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193211017, Length=198, Percent_Identity=29.2929292929293, Blast_Score=64, Evalue=4e-11, Organism=Caenorhabditis elegans, GI193211015, Length=198, Percent_Identity=29.2929292929293, Blast_Score=64, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71996809, Length=198, Percent_Identity=29.2929292929293, Blast_Score=64, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6321720, Length=189, Percent_Identity=28.042328042328, Blast_Score=62, Evalue=5e-11, Organism=Drosophila melanogaster, GI161076682, Length=187, Percent_Identity=34.2245989304813, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI161076684, Length=187, Percent_Identity=34.2245989304813, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI24581617, Length=187, Percent_Identity=34.2245989304813, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI24581615, Length=187, Percent_Identity=34.2245989304813, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI85816269, Length=187, Percent_Identity=31.0160427807487, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI24580553, Length=187, Percent_Identity=31.0160427807487, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI85724864, Length=187, Percent_Identity=31.0160427807487, Blast_Score=74, Evalue=6e-14, Organism=Drosophila melanogaster, GI24580555, Length=187, Percent_Identity=31.0160427807487, Blast_Score=74, Evalue=6e-14, Organism=Drosophila melanogaster, GI221500419, Length=224, Percent_Identity=32.1428571428571, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI19920532, Length=169, Percent_Identity=29.585798816568, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI24580930, Length=169, Percent_Identity=29.585798816568, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI24666092, Length=190, Percent_Identity=28.9473684210526, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI21357907, Length=174, Percent_Identity=27.5862068965517, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007184, Length=193, Percent_Identity=31.0880829015544, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI221500365, Length=193, Percent_Identity=31.0880829015544, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24581383, Length=189, Percent_Identity=29.6296296296296, Blast_Score=66, Evalue=1e-11, Organism=Drosophila melanogaster, GI24581385, Length=189, Percent_Identity=29.6296296296296, Blast_Score=66, Evalue=1e-11, Organism=Drosophila melanogaster, GI28574744, Length=185, Percent_Identity=29.7297297297297, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI281363262, Length=165, Percent_Identity=30.3030303030303, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI24581387, Length=189, Percent_Identity=29.6296296296296, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI24653245, Length=165, Percent_Identity=30.3030303030303, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI28574150, Length=196, Percent_Identity=23.9795918367347, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI116007328, Length=196, Percent_Identity=23.9795918367347, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR005895 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: =3.6.3.41 [H]
Molecular weight: Translated: 22130; Mature: 22130
Theoretical pI: Translated: 7.98; Mature: 7.98
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLAEGLSARRGEDLIFKDISFDLAGGEALVVTGPNGSGKSTLLRVLAGLLGADSGRVR CCCHHHHHHCCCCCCEEEEECEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE LKGGPAGFDHPRELSHYLGHRNAMKRELTVEENLIFWQRFLGDSPGGSGDGLVEAATAVG EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH LADIIHLPFGYLSAGQQRRMAMAKLLVAYRPIWLLDEPTAALDVSADRLFAGLVARHLER HHHHHHCCHHHHCCCHHHHHHHHHHHHHHCCEEEECCCCCEEECCHHHHHHHHHHHHHHC GGIVIAATHQALGFTGVKSLEMTGFFH CCEEEEECCCHHCCCCCCCEEECCCCC >Mature Secondary Structure MRLLAEGLSARRGEDLIFKDISFDLAGGEALVVTGPNGSGKSTLLRVLAGLLGADSGRVR CCCHHHHHHCCCCCCEEEEECEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE LKGGPAGFDHPRELSHYLGHRNAMKRELTVEENLIFWQRFLGDSPGGSGDGLVEAATAVG EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH LADIIHLPFGYLSAGQQRRMAMAKLLVAYRPIWLLDEPTAALDVSADRLFAGLVARHLER HHHHHHCCHHHHCCCHHHHHHHHHHHHHHCCEEEECCCCCEEECCHHHHHHHHHHHHHHC GGIVIAATHQALGFTGVKSLEMTGFFH CCEEEEECCCHHCCCCCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11481430 [H]