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The map label for this gene is sdpR [H]

Identifier: 150398274

GI number: 150398274

Start: 3227503

End: 3227817

Strand: Reverse

Name: sdpR [H]

Synonym: Smed_3080

Alternate gene names: 150398274

Gene position: 3227817-3227503 (Counterclockwise)

Preceding gene: 150398275

Following gene: 150398273

Centisome position: 85.35

GC content: 60.32

Gene sequence:

>315_bases
ATGATTGAGAACGATATATTCAAAGCTCTCGCCGACCCGACCCGCCGTGCAATCTTCGAGAAGCTGGCGAGCGGCAGCAT
GAACGCCAGTGCCTTGCGCGATGGAATGCACATCAGCCAGCCGGCCATGTCCCAGCACCTCCACGTGTTGCGTGATGCAA
AGCTGGTGCGGGAAGAACGGCACGGGCGCTTCGTGAACTACGAGGTCGACCCGGAGGGGCTGGCGCTCATAGCCGGATGG
CTGACGAAGTATCGCGCCTACTGGCCGGCGCGTATCGATGCGTTGAGAGACCTGCTGAAGGACATGGGACAATGA

Upstream 100 bases:

>100_bases
GGTACTTCTCGTAGGCCGAGCGGATGTGAGGCGAGGTCACTCTCGCCGGAAACGTGCGGCAGTGTTGCGAATCAGATAAG
TGTTTGCTTATCTGTCGTTT

Downstream 100 bases:

>100_bases
ATAAAGTGAACCCACGCGAACAGGCCGGGCATCTGGTGTTCGAATATGAACTCGGTGCACCGCCCGATATGGTTTGGCAG
GCGATCAGTGTCCCTGAGCT

Product: regulatory protein ArsR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MIENDIFKALADPTRRAIFEKLASGSMNASALRDGMHISQPAMSQHLHVLRDAKLVREERHGRFVNYEVDPEGLALIAGW
LTKYRAYWPARIDALRDLLKDMGQ

Sequences:

>Translated_104_residues
MIENDIFKALADPTRRAIFEKLASGSMNASALRDGMHISQPAMSQHLHVLRDAKLVREERHGRFVNYEVDPEGLALIAGW
LTKYRAYWPARIDALRDLLKDMGQ
>Mature_104_residues
MIENDIFKALADPTRRAIFEKLASGSMNASALRDGMHISQPAMSQHLHVLRDAKLVREERHGRFVNYEVDPEGLALIAGW
LTKYRAYWPARIDALRDLLKDMGQ

Specific function: Represses the transcription of the sdpIR operon and of several other operons that probably contribute to delaying commitment to sporulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 11877; Mature: 11877

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIENDIFKALADPTRRAIFEKLASGSMNASALRDGMHISQPAMSQHLHVLRDAKLVREER
CCCHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
HGRFVNYEVDPEGLALIAGWLTKYRAYWPARIDALRDLLKDMGQ
CCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIENDIFKALADPTRRAIFEKLASGSMNASALRDGMHISQPAMSQHLHVLRDAKLVREER
CCCHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
HGRFVNYEVDPEGLALIAGWLTKYRAYWPARIDALRDLLKDMGQ
CCCEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]