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The map label for this gene is 150398266

Identifier: 150398266

GI number: 150398266

Start: 3220102

End: 3220689

Strand: Reverse

Name: 150398266

Synonym: Smed_3072

Alternate gene names: NA

Gene position: 3220689-3220102 (Counterclockwise)

Preceding gene: 150398267

Following gene: 150398265

Centisome position: 85.16

GC content: 60.88

Gene sequence:

>588_bases
ATGCCGAGACTATTCACCGCCCTCGAAATTCCGCGCAATGCAGCAATGAGTCTTTCCTTGCTGCGCGGAGGTCTTCCCGG
AGCTCGCTGGATCGATGTGGAGAATTATCACATCACGCTCCGCTTCATCGGCGACGTAGACTGGCGTACCGCCGATGAAA
TCATCGACAGACTTGACCGCATCGAACGGCCCGAGTTTCAGCTGCAGCTGTCGGGCACCGGCGCCTTCGGCTCCAAGAAG
CCGCATTCCGTCTGGGCCGGCGTCAGTGCCGTTCCCGAGATGTTCGCCCTGCAGGCGGAAATCGAACGCATCTGCCAGCG
CATAGGGCTGCCCTCGGATCCACGCAAGTTCACCCCGCATGTGACGCTGGCGCGCCTGCGCTCATCGCGCGTCGAGGACG
TGGTCGAATACCTCTCCGGGCGTGGCAATTTCGTCACTGCTCCATTCACCGTTTCGCGCTTCGTGCTTCTATCGTCACGC
GATTCGGTCGGCGGTGGTCCGTATCTCACGGAAGAGGTCTTTCCGCTTCACGAAGAGCGCTCGAGCCTCTCGAGTACCGA
CAAACATCCGGCTTCCAGCGCCTGGTAG

Upstream 100 bases:

>100_bases
TTAAGATAAAGTTAACGTTCCTACGGAACAAATAATGGTTGCGTGCAGGTGCGATGCGTGATTCGCTTCAAGCATCTGCA
AGAGATTCGGGGAGCTCGCC

Downstream 100 bases:

>100_bases
AGCGCATCGAAGCTTCCGTCCATTCGTGATGGAGTCCGGAACTCCTCGCCTCGCACTGCGGCATAGGCCCCGGAAGAGGT
GCATCTTGCGCGCCATCGCA

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MPRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDVDWRTADEIIDRLDRIERPEFQLQLSGTGAFGSKK
PHSVWAGVSAVPEMFALQAEIERICQRIGLPSDPRKFTPHVTLARLRSSRVEDVVEYLSGRGNFVTAPFTVSRFVLLSSR
DSVGGGPYLTEEVFPLHEERSSLSSTDKHPASSAW

Sequences:

>Translated_195_residues
MPRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDVDWRTADEIIDRLDRIERPEFQLQLSGTGAFGSKK
PHSVWAGVSAVPEMFALQAEIERICQRIGLPSDPRKFTPHVTLARLRSSRVEDVVEYLSGRGNFVTAPFTVSRFVLLSSR
DSVGGGPYLTEEVFPLHEERSSLSSTDKHPASSAW
>Mature_194_residues
PRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDVDWRTADEIIDRLDRIERPEFQLQLSGTGAFGSKKP
HSVWAGVSAVPEMFALQAEIERICQRIGLPSDPRKFTPHVTLARLRSSRVEDVVEYLSGRGNFVTAPFTVSRFVLLSSRD
SVGGGPYLTEEVFPLHEERSSLSSTDKHPASSAW

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 21792; Mature: 21661

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDVDWRTADEIIDRLDR
CCCCHHHHHCCCCHHHHHHHHHCCCCCCEEEEECCEEEEEEEECCCCCCCHHHHHHHHHH
IERPEFQLQLSGTGAFGSKKPHSVWAGVSAVPEMFALQAEIERICQRIGLPSDPRKFTPH
CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
VTLARLRSSRVEDVVEYLSGRGNFVTAPFTVSRFVLLSSRDSVGGGPYLTEEVFPLHEER
HHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHEEEEECCCCCCCCCCCCHHHCCCHHHH
SSLSSTDKHPASSAW
HHHCCCCCCCCCCCC
>Mature Secondary Structure 
PRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDVDWRTADEIIDRLDR
CCCHHHHHCCCCHHHHHHHHHCCCCCCEEEEECCEEEEEEEECCCCCCCHHHHHHHHHH
IERPEFQLQLSGTGAFGSKKPHSVWAGVSAVPEMFALQAEIERICQRIGLPSDPRKFTPH
CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
VTLARLRSSRVEDVVEYLSGRGNFVTAPFTVSRFVLLSSRDSVGGGPYLTEEVFPLHEER
HHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHEEEEECCCCCCCCCCCCHHHCCCHHHH
SSLSSTDKHPASSAW
HHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]