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The map label for this gene is xylR [H]

Identifier: 150398148

GI number: 150398148

Start: 3100121

End: 3101326

Strand: Direct

Name: xylR [H]

Synonym: Smed_2951

Alternate gene names: 150398148

Gene position: 3100121-3101326 (Clockwise)

Preceding gene: 150398131

Following gene: 150398149

Centisome position: 81.97

GC content: 64.76

Gene sequence:

>1206_bases
ATGAAGACCGCCGATCCTGAACTGATGCGCGCAATAAACCGCTTCAATGTGCTCGATACGATCCGCCGACACGGCCCCAT
TTCACGTGTCGAGATCAGCGAGCGCACCGAACTGTCCACCACTACGGTCTCAGCCATCACCGCATCGCTGCTCGACGACG
GACTCATCCTGACCAGGCACGAGGGCGACATCCGCAACGCTGCCGCAAGGGGGCGTCCACGCGTCATGCTGGAGCTCAAT
CCGGAGGCCGCACGCGTCGTCGGCGCGAAAATTGCCGCCAACCGCATGGTCTTTGCCGTCACCAACTTCCGAGGAGAGGT
TCTCTCCAACCTGACTTTGCCGATCCGGGTCGACCGCCAGCCCATCGCCGTCATTGCCGACCTGATCGAGGACGGCGTGC
GGCGCTGCGTCGTCGACGCCGACCTTTCCCTCGACGACATCGATTCGATCTGCATCGGCCTTCCCGGCGTCGTGGAGCAC
CGCACCGGCCATGTCCGATCGAGCCCGATATTTCGTGAGACCAATGTCGATTTTGCAAGCGAAATGACTAGCAGGCTTGA
TGTGGCGACTATCGTGGAGAGCGACGCTCACGCGATCACACTTGCTCACCATTGGTTCGGCCGCGCCCGCGACCTCGACG
ACATGGTGCTCGTCTCGCTCGAGCAAACGCTCGGGCTCGGCGTACTGCATGCCGGCCAGCTTTTCCGCGGCGCCGGAGGA
CTGAGCCACAATCTCGGCGATCTCGTGCTCGGAGTCGGCCGGAGCGAGACCATCCGCCTCTCCATGCTCGCCGGGGAAAA
AGCGATCCTCGGCGAACACGCCATGGACGGGCGATTTGCCGAGGCGGTGCGCCTCGGGCGGGGCATGACGCATGCGCAGA
CGCTGATCGCAGCGGAGGATGACGCACTGATCGCGGCGGCTTCGCGCGCCGGAGAAGCGATCGGGCTCGCCGTCGCCAAC
ATCGTTACGCTGTTCGGACCGCCACGGGTCGTCATCGTCGGTTCGAGCCTGTCGCTCGGCACCGTTTTCGTGGAGAGCAT
AGGCCGGTCCTACCGGGACGCGATCCCTCCCTCGATCTCGACGGTGGCGGAACTCGTTTTCGACGAATCGGCCGACGAGA
CCTGGGCGCAGGGAGCGGCCGTCGTGGCGCTCTGCGAACTCTACGAGTCCCCCTGGGGGACGACCGGACCGGCGCCGGCG
CTTTGA

Upstream 100 bases:

>100_bases
AGCTTGACAAGGGATGTGACATGCCAGTTATTTAATTCGCATCCCGGCAAAACATCCGGGCCCACCAACCGGCCACCAAG
CACGCGAGCATCTGCAGACA

Downstream 100 bases:

>100_bases
CGCTTCCGGCTTCTGCAAATTCCACATCGGGAGGAGACTTATGGAAAGACTCGGTATCGGCATCATCGGCTGCGGCAACA
TTTCGTCCGCCTATCTGAAG

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MKTADPELMRAINRFNVLDTIRRHGPISRVEISERTELSTTTVSAITASLLDDGLILTRHEGDIRNAAARGRPRVMLELN
PEAARVVGAKIAANRMVFAVTNFRGEVLSNLTLPIRVDRQPIAVIADLIEDGVRRCVVDADLSLDDIDSICIGLPGVVEH
RTGHVRSSPIFRETNVDFASEMTSRLDVATIVESDAHAITLAHHWFGRARDLDDMVLVSLEQTLGLGVLHAGQLFRGAGG
LSHNLGDLVLGVGRSETIRLSMLAGEKAILGEHAMDGRFAEAVRLGRGMTHAQTLIAAEDDALIAAASRAGEAIGLAVAN
IVTLFGPPRVVIVGSSLSLGTVFVESIGRSYRDAIPPSISTVAELVFDESADETWAQGAAVVALCELYESPWGTTGPAPA
L

Sequences:

>Translated_401_residues
MKTADPELMRAINRFNVLDTIRRHGPISRVEISERTELSTTTVSAITASLLDDGLILTRHEGDIRNAAARGRPRVMLELN
PEAARVVGAKIAANRMVFAVTNFRGEVLSNLTLPIRVDRQPIAVIADLIEDGVRRCVVDADLSLDDIDSICIGLPGVVEH
RTGHVRSSPIFRETNVDFASEMTSRLDVATIVESDAHAITLAHHWFGRARDLDDMVLVSLEQTLGLGVLHAGQLFRGAGG
LSHNLGDLVLGVGRSETIRLSMLAGEKAILGEHAMDGRFAEAVRLGRGMTHAQTLIAAEDDALIAAASRAGEAIGLAVAN
IVTLFGPPRVVIVGSSLSLGTVFVESIGRSYRDAIPPSISTVAELVFDESADETWAQGAAVVALCELYESPWGTTGPAPA
L
>Mature_401_residues
MKTADPELMRAINRFNVLDTIRRHGPISRVEISERTELSTTTVSAITASLLDDGLILTRHEGDIRNAAARGRPRVMLELN
PEAARVVGAKIAANRMVFAVTNFRGEVLSNLTLPIRVDRQPIAVIADLIEDGVRRCVVDADLSLDDIDSICIGLPGVVEH
RTGHVRSSPIFRETNVDFASEMTSRLDVATIVESDAHAITLAHHWFGRARDLDDMVLVSLEQTLGLGVLHAGQLFRGAGG
LSHNLGDLVLGVGRSETIRLSMLAGEKAILGEHAMDGRFAEAVRLGRGMTHAQTLIAAEDDALIAAASRAGEAIGLAVAN
IVTLFGPPRVVIVGSSLSLGTVFVESIGRSYRDAIPPSISTVAELVFDESADETWAQGAAVVALCELYESPWGTTGPAPA
L

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=367, Percent_Identity=22.8882833787466, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787878, Length=403, Percent_Identity=23.5732009925558, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR; PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 42807; Mature: 42807

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTADPELMRAINRFNVLDTIRRHGPISRVEISERTELSTTTVSAITASLLDDGLILTRH
CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEC
EGDIRNAAARGRPRVMLELNPEAARVVGAKIAANRMVFAVTNFRGEVLSNLTLPIRVDRQ
CCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCEEEEEEECCCHHHHHCCEEEEEECCC
PIAVIADLIEDGVRRCVVDADLSLDDIDSICIGLPGVVEHRTGHVRSSPIFRETNVDFAS
HHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEECCCCHHH
EMTSRLDVATIVESDAHAITLAHHWFGRARDLDDMVLVSLEQTLGLGVLHAGQLFRGAGG
HHHHHCCHHEEECCCCCEEEEEHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCC
LSHNLGDLVLGVGRSETIRLSMLAGEKAILGEHAMDGRFAEAVRLGRGMTHAQTLIAAED
CCCCCCHHEEECCCCCEEEEEEECCCHHHHCCCCCCCHHHHHHHHCCCCHHHHHEEECCC
DALIAAASRAGEAIGLAVANIVTLFGPPRVVIVGSSLSLGTVFVESIGRSYRDAIPPSIS
CCEEEEHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHH
TVAELVFDESADETWAQGAAVVALCELYESPWGTTGPAPAL
HHHHHHHCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKTADPELMRAINRFNVLDTIRRHGPISRVEISERTELSTTTVSAITASLLDDGLILTRH
CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEC
EGDIRNAAARGRPRVMLELNPEAARVVGAKIAANRMVFAVTNFRGEVLSNLTLPIRVDRQ
CCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCEEEEEEECCCHHHHHCCEEEEEECCC
PIAVIADLIEDGVRRCVVDADLSLDDIDSICIGLPGVVEHRTGHVRSSPIFRETNVDFAS
HHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCEEECCCCHHH
EMTSRLDVATIVESDAHAITLAHHWFGRARDLDDMVLVSLEQTLGLGVLHAGQLFRGAGG
HHHHHCCHHEEECCCCCEEEEEHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCC
LSHNLGDLVLGVGRSETIRLSMLAGEKAILGEHAMDGRFAEAVRLGRGMTHAQTLIAAED
CCCCCCHHEEECCCCCEEEEEEECCCHHHHCCCCCCCHHHHHHHHCCCCHHHHHEEECCC
DALIAAASRAGEAIGLAVANIVTLFGPPRVVIVGSSLSLGTVFVESIGRSYRDAIPPSIS
CCEEEEHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHH
TVAELVFDESADETWAQGAAVVALCELYESPWGTTGPAPAL
HHHHHHHCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8920183 [H]