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The map label for this gene is cytR [C]

Identifier: 150397990

GI number: 150397990

Start: 2911576

End: 2912613

Strand: Reverse

Name: cytR [C]

Synonym: Smed_2792

Alternate gene names: 150397990

Gene position: 2912613-2911576 (Counterclockwise)

Preceding gene: 150397992

Following gene: 150397989

Centisome position: 77.01

GC content: 65.03

Gene sequence:

>1038_bases
ATGCGACCGACAGTTCACGATATCGCGGCCGAGGCGGGCGTCAGTCTCGCCACCGTCGACCGGGTGTTGAACAACCGCCC
GGGCGTGAGAAGCGTCACGCGTAACAGGGTGGAGCGCGCGATCGCCACGCTCGGCTACGTTCGCGACGTCGCCGCTGCCA
ATCTCGCCAAGAGTCGCAGCTATCCCCTGGTCTTCATTCTGCCCTCCGGCGAAAACGCCTTCATGCGCGGTCTCGAGTCC
GAGTTGCGCTTCGCGATGTCGCGTTCTGCGGCCGAGCGGCTGGATATCACCATTCTTTCCGTTCCTGCCTTCGACGCGCC
GGCGCTCGCCGCTGCCTTGCTCGACGCGCGCAAGCGCCGGCCCGCGGGCGTTGCCGTCGTCGCCGTCGAAGCGCCCGAAG
TGACTGAGGCGGTGAAGCGGCTCTGCGAAGACGGTGTTTCCGTCGTTACGCTGGTGTCCGATCTGCCCGGATCCGGGCGC
GATCATTTCGCCGGCGTCGATAACGTCGCGGCAGGTCGAACCGCCGGCAGCCTGTTAGGCCGCTTTCTGGGCGGCCGCGA
AGGGCCCGTCGCGGTGCTTGCCGGTTCCATGCTGGTGCGCGACCACCGCGACCGGCTGGAGGGTTTCCGGGCAGTGACAA
GCGAGGATTTCGCCTCCCGACAGGTTCTTCCGGTCATCGAGGGACAAGACAACCCGTTGCTCGTCGAGAAGCTCGTAGGC
GCGCTGCTCGAGCGGAATCCCGACCTTGCCGGCATCTACAGCCTCGGTGCCGGCAATCGCGGGCTCATAGCCGCACTCGA
AAAGGCAGGCAGGGCAAAATCCGTCTGTACAATCGCGCATGAATTGACCCCGCACAGCCGTGCAGCCCTTCTTTCCGGCA
CGATCGATGCGCTGCTCAATCAGAATGCGGGTCACGAAGTCAGGAGCGCCATCCGGGTGCTGAAAGCAAAGGCGGACGGG
CTGCCCGTGATCGCGGCGCAGGAACGCATCCGCATCGATATTTTCCTGAAGGACAACCTGCCGCTCGAGCAGGAATAG

Upstream 100 bases:

>100_bases
GGGGCGGATGCACAGCGAATATCGCCTCCTTTTACAGACTCCCAGATTTTTGATTTACGTACATCAAAAATTCCTCTAAG
GGGTTTGCCGGGAGGAAGAT

Downstream 100 bases:

>100_bases
GAGGACACCATGTATCTCGGACTGGATCTCGGCACTTCGGGAGTGAAGGCCATGCTGATGGACGAGGAGCAGCGGATCGT
CGGCTCCGCGACCGGAGCGC

Product: regulatory protein LacI

Products: NA

Alternate protein names: LacI Family Transcription Regulator; Regulatory Protein LacI; LacI Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator LacI Family Protein; Transcriptional Regulator Protein LacI Family; Regulatory Protein LacI Family; LacI Regulatory Protein; LacI Family Regulatory Protein; Transcription Regulator Protein; HTH-Type Transcriptional Repressor PurR; Ribose ABC Transporter; Transcriptional Regulator Protein Laci-Family; ABC-Type Sugar Transport System Periplasmic Component; Transcriptional Regulatory Protein; Sugar ABC Transporter Periplasmic Protein; Regulatory Protein; LacI Family Regulatory; HTH-Type Transcriptional Repressor Purr; Laci-Family Transcription Regulator; Transcriptional Regulatory Protein LacI Family; Transcription Regulator; Transcriptional Repressor

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MRPTVHDIAAEAGVSLATVDRVLNNRPGVRSVTRNRVERAIATLGYVRDVAAANLAKSRSYPLVFILPSGENAFMRGLES
ELRFAMSRSAAERLDITILSVPAFDAPALAAALLDARKRRPAGVAVVAVEAPEVTEAVKRLCEDGVSVVTLVSDLPGSGR
DHFAGVDNVAAGRTAGSLLGRFLGGREGPVAVLAGSMLVRDHRDRLEGFRAVTSEDFASRQVLPVIEGQDNPLLVEKLVG
ALLERNPDLAGIYSLGAGNRGLIAALEKAGRAKSVCTIAHELTPHSRAALLSGTIDALLNQNAGHEVRSAIRVLKAKADG
LPVIAAQERIRIDIFLKDNLPLEQE

Sequences:

>Translated_345_residues
MRPTVHDIAAEAGVSLATVDRVLNNRPGVRSVTRNRVERAIATLGYVRDVAAANLAKSRSYPLVFILPSGENAFMRGLES
ELRFAMSRSAAERLDITILSVPAFDAPALAAALLDARKRRPAGVAVVAVEAPEVTEAVKRLCEDGVSVVTLVSDLPGSGR
DHFAGVDNVAAGRTAGSLLGRFLGGREGPVAVLAGSMLVRDHRDRLEGFRAVTSEDFASRQVLPVIEGQDNPLLVEKLVG
ALLERNPDLAGIYSLGAGNRGLIAALEKAGRAKSVCTIAHELTPHSRAALLSGTIDALLNQNAGHEVRSAIRVLKAKADG
LPVIAAQERIRIDIFLKDNLPLEQE
>Mature_345_residues
MRPTVHDIAAEAGVSLATVDRVLNNRPGVRSVTRNRVERAIATLGYVRDVAAANLAKSRSYPLVFILPSGENAFMRGLES
ELRFAMSRSAAERLDITILSVPAFDAPALAAALLDARKRRPAGVAVVAVEAPEVTEAVKRLCEDGVSVVTLVSDLPGSGR
DHFAGVDNVAAGRTAGSLLGRFLGGREGPVAVLAGSMLVRDHRDRLEGFRAVTSEDFASRQVLPVIEGQDNPLLVEKLVG
ALLERNPDLAGIYSLGAGNRGLIAALEKAGRAKSVCTIAHELTPHSRAALLSGTIDALLNQNAGHEVRSAIRVLKAKADG
LPVIAAQERIRIDIFLKDNLPLEQE

Specific function: This Protein Negatively Controls The Transcription Initiation Of Genes Such As Deocabd, Udp, And Cdd Encoding Catabolizing Enzymes And Nupc, Nupg, And Tsx Encoding Transporting And Pore-Forming Proteins. Binds Cytidine And Adenosine As Effectors. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36626; Mature: 36626

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPTVHDIAAEAGVSLATVDRVLNNRPGVRSVTRNRVERAIATLGYVRDVAAANLAKSRS
CCCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
YPLVFILPSGENAFMRGLESELRFAMSRSAAERLDITILSVPAFDAPALAAALLDARKRR
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHCC
PAGVAVVAVEAPEVTEAVKRLCEDGVSVVTLVSDLPGSGRDHFAGVDNVAAGRTAGSLLG
CCCEEEEEECCCHHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCCCCCCHHCCCHHHHHHH
RFLGGREGPVAVLAGSMLVRDHRDRLEGFRAVTSEDFASRQVLPVIEGQDNPLLVEKLVG
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH
ALLERNPDLAGIYSLGAGNRGLIAALEKAGRAKSVCTIAHELTPHSRAALLSGTIDALLN
HHHHCCCCCEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
QNAGHEVRSAIRVLKAKADGLPVIAAQERIRIDIFLKDNLPLEQE
CCCCHHHHHHHHHHHHHCCCCCEEEECCEEEEEEEEECCCCCCCC
>Mature Secondary Structure
MRPTVHDIAAEAGVSLATVDRVLNNRPGVRSVTRNRVERAIATLGYVRDVAAANLAKSRS
CCCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
YPLVFILPSGENAFMRGLESELRFAMSRSAAERLDITILSVPAFDAPALAAALLDARKRR
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHCC
PAGVAVVAVEAPEVTEAVKRLCEDGVSVVTLVSDLPGSGRDHFAGVDNVAAGRTAGSLLG
CCCEEEEEECCCHHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCCCCCCHHCCCHHHHHHH
RFLGGREGPVAVLAGSMLVRDHRDRLEGFRAVTSEDFASRQVLPVIEGQDNPLLVEKLVG
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH
ALLERNPDLAGIYSLGAGNRGLIAALEKAGRAKSVCTIAHELTPHSRAALLSGTIDALLN
HHHHCCCCCEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
QNAGHEVRSAIRVLKAKADGLPVIAAQERIRIDIFLKDNLPLEQE
CCCCHHHHHHHHHHHHHCCCCCEEEECCEEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA