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The map label for this gene is ycaD [C]

Identifier: 150397856

GI number: 150397856

Start: 2762955

End: 2764256

Strand: Direct

Name: ycaD [C]

Synonym: Smed_2658

Alternate gene names: 150397856

Gene position: 2762955-2764256 (Clockwise)

Preceding gene: 150397853

Following gene: 150397857

Centisome position: 73.06

GC content: 63.13

Gene sequence:

>1302_bases
ATGAGAAATAACCTGCTTCCCGTTGCCGCTCTGCTTCTCGGCACATTGTTTCTCTTTCTCGGAAACGGTCTGCAGGGCCT
GCTCCTGCCGGTGCGCGGCACGGCGGAAGGCTATCCGACGACGATACTCGGTCTGTTCGGCACGCTGTGGGCAACCGGTT
TCGTGCTCGGCTGCTTTTTTGCGCCGAACATCGTCAAGCGTATTGGGCACGTGCGCGCCTTCAGCGTGTTCACCGCCCTG
ATCGCTATCGTTTCGTTGTTGACGGGTATTCTGATCGATCCGATCTGGTGGTTGGCGCTCCGCGCAGTCACAGGCTTCTC
CACTGCCGGAACTTCGATGATCATCGAAAGCTGGCTGAACGAGCGCGCCACCAATGAGAGCCGCGGCCTGATCTTCTCGC
TCTACATCGCCATCACCCTTTTCGGCGTCGTCGGCGGGCAGATGATGATTCCGTTCGGCGAGACCTCCACGACTTTCTTC
TTTATGATCTGCGGCATTCTCTATTGCGTCGCGATGCTGCCGACGCTCATGTCCAGGGCCGCGTCGCCGCAGCCGCTGAA
GCAGGTCCGCCTCGATCTGCGCGGTCTCTACAGCAATTCCCCGGTCTCCTTTCTCGGCATCCTGCTCATCGGCATCGCCA
ACGGCGCCTTCGGCACGCTGGGTGCCGTTTTCGGCCGGCAGGCGGGCCTGTCGGACAGCACCGTCGCTGCGATGATGAGC
GTCGCGATCTTCTCGGGCGCCGTCATGCAACTGCCGGCCGGCCGCATCTCCGACCGCGTCGACCGCCGCTATGTGCTCGC
CGCGCTCGCCGGGATCGGCGCGCTCGCCGGCCTGCTGATGTTTCTCGTCGAGCCGAGCCAGGTCTGGATCGTTCTGACCC
TGATCGCAATCTACGGGGCGGCCGCCAATGCGCTCTATCCGATCGCTGTTTCCCACGCCAACGACTTCGCCACAGCCGAG
GATTTCGTGAAGGTTTCGGGCGGGCTCCTGCTTCTTTACGGAGTCGGCACGATCATCGGGCCGACGATCGGCGGACCGAT
AATGACCGCCAGCGGGCCCTATGGCCTCTTCATGATCACGGCGTGTGCGCATATGCTGATCACTGCCTATGCGATCGTCC
GCAGTCGCCGGCGCGCACCGGTTCCCGCGGCCGATCGGGAAAACTTCTCGCCGGTCAATGCCGGAACCGCGACGACGCCG
GAGAGCCTGCAGCTCTCGCCGCGCGCAGCTCCGATGGAGGAACTGGCGGAGGAAGGCGCCGGCGATCCCCAGGAGGAGGA
GAAATCGAATGAGCCTGTTTGA

Upstream 100 bases:

>100_bases
TATTGTTTTCGCCGCCGATTTGCAATGACCGGTGGTATCGATTTCCCTCGGCAGGGCGATACGCGTCACAGCTTGTCCAG
GGCAGAACGTCGGATGGATC

Downstream 100 bases:

>100_bases
CGAGGACCAAGCGAAGAAGAAGACCGAGCACGAGATCGGCAGCGACCTTTCGCTGCTCTCGGTGGATGAACTGAACGCGC
GCATCGCGCTCCTGACGCAA

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MRNNLLPVAALLLGTLFLFLGNGLQGLLLPVRGTAEGYPTTILGLFGTLWATGFVLGCFFAPNIVKRIGHVRAFSVFTAL
IAIVSLLTGILIDPIWWLALRAVTGFSTAGTSMIIESWLNERATNESRGLIFSLYIAITLFGVVGGQMMIPFGETSTTFF
FMICGILYCVAMLPTLMSRAASPQPLKQVRLDLRGLYSNSPVSFLGILLIGIANGAFGTLGAVFGRQAGLSDSTVAAMMS
VAIFSGAVMQLPAGRISDRVDRRYVLAALAGIGALAGLLMFLVEPSQVWIVLTLIAIYGAAANALYPIAVSHANDFATAE
DFVKVSGGLLLLYGVGTIIGPTIGGPIMTASGPYGLFMITACAHMLITAYAIVRSRRRAPVPAADRENFSPVNAGTATTP
ESLQLSPRAAPMEELAEEGAGDPQEEEKSNEPV

Sequences:

>Translated_433_residues
MRNNLLPVAALLLGTLFLFLGNGLQGLLLPVRGTAEGYPTTILGLFGTLWATGFVLGCFFAPNIVKRIGHVRAFSVFTAL
IAIVSLLTGILIDPIWWLALRAVTGFSTAGTSMIIESWLNERATNESRGLIFSLYIAITLFGVVGGQMMIPFGETSTTFF
FMICGILYCVAMLPTLMSRAASPQPLKQVRLDLRGLYSNSPVSFLGILLIGIANGAFGTLGAVFGRQAGLSDSTVAAMMS
VAIFSGAVMQLPAGRISDRVDRRYVLAALAGIGALAGLLMFLVEPSQVWIVLTLIAIYGAAANALYPIAVSHANDFATAE
DFVKVSGGLLLLYGVGTIIGPTIGGPIMTASGPYGLFMITACAHMLITAYAIVRSRRRAPVPAADRENFSPVNAGTATTP
ESLQLSPRAAPMEELAEEGAGDPQEEEKSNEPV
>Mature_433_residues
MRNNLLPVAALLLGTLFLFLGNGLQGLLLPVRGTAEGYPTTILGLFGTLWATGFVLGCFFAPNIVKRIGHVRAFSVFTAL
IAIVSLLTGILIDPIWWLALRAVTGFSTAGTSMIIESWLNERATNESRGLIFSLYIAITLFGVVGGQMMIPFGETSTTFF
FMICGILYCVAMLPTLMSRAASPQPLKQVRLDLRGLYSNSPVSFLGILLIGIANGAFGTLGAVFGRQAGLSDSTVAAMMS
VAIFSGAVMQLPAGRISDRVDRRYVLAALAGIGALAGLLMFLVEPSQVWIVLTLIAIYGAAANALYPIAVSHANDFATAE
DFVKVSGGLLLLYGVGTIIGPTIGGPIMTASGPYGLFMITACAHMLITAYAIVRSRRRAPVPAADRENFSPVNAGTATTP
ESLQLSPRAAPMEELAEEGAGDPQEEEKSNEPV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=376, Percent_Identity=25, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 45729; Mature: 45729

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNNLLPVAALLLGTLFLFLGNGLQGLLLPVRGTAEGYPTTILGLFGTLWATGFVLGCFF
CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
APNIVKRIGHVRAFSVFTALIAIVSLLTGILIDPIWWLALRAVTGFSTAGTSMIIESWLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ERATNESRGLIFSLYIAITLFGVVGGQMMIPFGETSTTFFFMICGILYCVAMLPTLMSRA
HHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHC
ASPQPLKQVRLDLRGLYSNSPVSFLGILLIGIANGAFGTLGAVFGRQAGLSDSTVAAMMS
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHH
VAIFSGAVMQLPAGRISDRVDRRYVLAALAGIGALAGLLMFLVEPSQVWIVLTLIAIYGA
HHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AANALYPIAVSHANDFATAEDFVKVSGGLLLLYGVGTIIGPTIGGPIMTASGPYGLFMIT
HHCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCEECCCCHHHHHHH
ACAHMLITAYAIVRSRRRAPVPAADRENFSPVNAGTATTPESLQLSPRAAPMEELAEEGA
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
GDPQEEEKSNEPV
CCCCHHHCCCCCC
>Mature Secondary Structure
MRNNLLPVAALLLGTLFLFLGNGLQGLLLPVRGTAEGYPTTILGLFGTLWATGFVLGCFF
CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
APNIVKRIGHVRAFSVFTALIAIVSLLTGILIDPIWWLALRAVTGFSTAGTSMIIESWLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ERATNESRGLIFSLYIAITLFGVVGGQMMIPFGETSTTFFFMICGILYCVAMLPTLMSRA
HHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHC
ASPQPLKQVRLDLRGLYSNSPVSFLGILLIGIANGAFGTLGAVFGRQAGLSDSTVAAMMS
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHH
VAIFSGAVMQLPAGRISDRVDRRYVLAALAGIGALAGLLMFLVEPSQVWIVLTLIAIYGA
HHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
AANALYPIAVSHANDFATAEDFVKVSGGLLLLYGVGTIIGPTIGGPIMTASGPYGLFMIT
HHCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCEECCCCHHHHHHH
ACAHMLITAYAIVRSRRRAPVPAADRENFSPVNAGTATTPESLQLSPRAAPMEELAEEGA
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
GDPQEEEKSNEPV
CCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]