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The map label for this gene is yddE [C]

Identifier: 150397853

GI number: 150397853

Start: 2759579

End: 2760496

Strand: Direct

Name: yddE [C]

Synonym: Smed_2655

Alternate gene names: 150397853

Gene position: 2759579-2760496 (Clockwise)

Preceding gene: 150397852

Following gene: 150397856

Centisome position: 72.97

GC content: 63.94

Gene sequence:

>918_bases
ATGAGCAGCGTCTCCTATGCCACCGTCGACGTCTTCACAGCCGAACGTTTCGCCGGCAATCAGCTTGCCGTCATTCCCGA
TGCCCGCGGTTTGAGCGATGCGCAGATGCAGGCGATCGCCACCGAATTCGCCTATTCCGAAGTCACCTTCGTCCTGCCGC
CTGAAAATCCGGAGAATACCGCACGCGTTCGCATCTTCACGCCCACGACCGAAGTGCCTTTCGCCGGTCATCCGAATGTC
GGCACGGCCTTCGTTCTTGGCCGGCAGCAGGAAATCTTCGGCCGCAAGCCCGGCCAGGCGTTGCGTTTCGAGGAAAAGGC
GGGCCTGGTCGAGGTGACGCTCCTCGGCAATGAAGGCGTTGTCAGCGGCGCAAGGATTATCGCCCCGCAGACACTGCAGA
TCGGCCCCGCCATCGACCCAGCGGTGATTGCCGCCAGCGCTTCGCTGCGCAGTGACGAGCTCAGCGAACGGGCTCACCGG
CCGGTGCGCATTTCGGTGGGGTTGCCCTTCGCCGTCGCGGAGGTGCGCGACCTGGCCGTTCTTTCGAAGGCGCGGCCGAA
CGTCTCCGCCTTCGAAGAGGCGAATACCCGCTATCCGCTCGCAGAAGACAGCTTCAGCCTGTTCCTTTATGCCCGCACGC
TCGAGCGGCCCTGGTATGTGAGAGCGCGCATGTTCGCGCCCCTCGACAACGTCATCGAAGACCCGGCGACCGGCAGCGCT
TCGGCGGCGCTCGGTGCCTATCTCGTCTCACTGCTTCCCGATGCCGACGCAAAGGTCGAACTCGTCATTGAACAGGGTGT
GGAAATGGGGCGACGCAGCATCATTGCCATCGCTGTCGGCAAGCGAGGCGGCGCCATTCGCGAGGTCAGCATCTCGGGCG
ACTGCGTGACGGCGATGCGCGGCGTGATCGAGGTCTGA

Upstream 100 bases:

>100_bases
TCTGTATCGTTTCCGATCCAGAGCGGGATGAGGAAAAGCGTGTGCGGCTTTCCGCCCGCATCCCGCGTCTCAACTCTTTG
AAATCGATCACGAGGCTTTC

Downstream 100 bases:

>100_bases
TGTTCGCAGCACCCCGGGAGTCCTTCGGACGCGCAGAGGCGGTCGCTCGTCAGGGCCCTGCGGCGTTGCAGTCTCCGAGC
GCGTCGAGGAGCGCGCGGAA

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MSSVSYATVDVFTAERFAGNQLAVIPDARGLSDAQMQAIATEFAYSEVTFVLPPENPENTARVRIFTPTTEVPFAGHPNV
GTAFVLGRQQEIFGRKPGQALRFEEKAGLVEVTLLGNEGVVSGARIIAPQTLQIGPAIDPAVIAASASLRSDELSERAHR
PVRISVGLPFAVAEVRDLAVLSKARPNVSAFEEANTRYPLAEDSFSLFLYARTLERPWYVRARMFAPLDNVIEDPATGSA
SAALGAYLVSLLPDADAKVELVIEQGVEMGRRSIIAIAVGKRGGAIREVSISGDCVTAMRGVIEV

Sequences:

>Translated_305_residues
MSSVSYATVDVFTAERFAGNQLAVIPDARGLSDAQMQAIATEFAYSEVTFVLPPENPENTARVRIFTPTTEVPFAGHPNV
GTAFVLGRQQEIFGRKPGQALRFEEKAGLVEVTLLGNEGVVSGARIIAPQTLQIGPAIDPAVIAASASLRSDELSERAHR
PVRISVGLPFAVAEVRDLAVLSKARPNVSAFEEANTRYPLAEDSFSLFLYARTLERPWYVRARMFAPLDNVIEDPATGSA
SAALGAYLVSLLPDADAKVELVIEQGVEMGRRSIIAIAVGKRGGAIREVSISGDCVTAMRGVIEV
>Mature_304_residues
SSVSYATVDVFTAERFAGNQLAVIPDARGLSDAQMQAIATEFAYSEVTFVLPPENPENTARVRIFTPTTEVPFAGHPNVG
TAFVLGRQQEIFGRKPGQALRFEEKAGLVEVTLLGNEGVVSGARIIAPQTLQIGPAIDPAVIAASASLRSDELSERAHRP
VRISVGLPFAVAEVRDLAVLSKARPNVSAFEEANTRYPLAEDSFSLFLYARTLERPWYVRARMFAPLDNVIEDPATGSAS
AALGAYLVSLLPDADAKVELVIEQGVEMGRRSIIAIAVGKRGGAIREVSISGDCVTAMRGVIEV

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=305, Percent_Identity=30.4918032786885, Blast_Score=97, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6321818, Length=317, Percent_Identity=29.9684542586751, Blast_Score=103, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 32640; Mature: 32508

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSVSYATVDVFTAERFAGNQLAVIPDARGLSDAQMQAIATEFAYSEVTFVLPPENPENT
CCCCCEEEEEEEEHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCEEEEEECCCCCCCC
ARVRIFTPTTEVPFAGHPNVGTAFVLGRQQEIFGRKPGQALRFEEKAGLVEVTLLGNEGV
EEEEEEECCCCCCCCCCCCCCEEEEECCCHHHHCCCCCCCEEECCCCCEEEEEEECCCCC
VSGARIIAPQTLQIGPAIDPAVIAASASLRSDELSERAHRPVRISVGLPFAVAEVRDLAV
CCCEEEECCCEEEECCCCCHHHEEECCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
LSKARPNVSAFEEANTRYPLAEDSFSLFLYARTLERPWYVRARMFAPLDNVIEDPATGSA
HHHCCCCCHHHHHCCCCCCCCCCCEEEEEEEEHHCCCEEEEEEECCCHHHHHCCCCCCCH
SAALGAYLVSLLPDADAKVELVIEQGVEMGRRSIIAIAVGKRGGAIREVSISGDCVTAMR
HHHHHHHHHHHCCCCCCEEEEEEHHCHHCCCCEEEEEEECCCCCEEEEEEECCCHHHHHH
GVIEV
HHHCC
>Mature Secondary Structure 
SSVSYATVDVFTAERFAGNQLAVIPDARGLSDAQMQAIATEFAYSEVTFVLPPENPENT
CCCCEEEEEEEEHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCEEEEEECCCCCCCC
ARVRIFTPTTEVPFAGHPNVGTAFVLGRQQEIFGRKPGQALRFEEKAGLVEVTLLGNEGV
EEEEEEECCCCCCCCCCCCCCEEEEECCCHHHHCCCCCCCEEECCCCCEEEEEEECCCCC
VSGARIIAPQTLQIGPAIDPAVIAASASLRSDELSERAHRPVRISVGLPFAVAEVRDLAV
CCCEEEECCCEEEECCCCCHHHEEECCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
LSKARPNVSAFEEANTRYPLAEDSFSLFLYARTLERPWYVRARMFAPLDNVIEDPATGSA
HHHCCCCCHHHHHCCCCCCCCCCCEEEEEEEEHHCCCEEEEEEECCCHHHHHCCCCCCCH
SAALGAYLVSLLPDADAKVELVIEQGVEMGRRSIIAIAVGKRGGAIREVSISGDCVTAMR
HHHHHHHHHHHCCCCCCEEEEEEHHCHHCCCCEEEEEEECCCCCEEEEEEECCCHHHHHH
GVIEV
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]