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The map label for this gene is omp16 [H]

Identifier: 150397824

GI number: 150397824

Start: 2726633

End: 2727163

Strand: Reverse

Name: omp16 [H]

Synonym: Smed_2626

Alternate gene names: 150397824

Gene position: 2727163-2726633 (Counterclockwise)

Preceding gene: 150397825

Following gene: 150397823

Centisome position: 72.11

GC content: 65.91

Gene sequence:

>531_bases
ATGAGCCGAATTGACGCCCCGGCAGCAAGCCGCATGCAGACCATCGCCCGCAATCCGATCATGATCGCGCTCGTCATGAC
GCTTGCCCTCGCTGGTTGCGCTTCCAAGAAGAACCTGCCGAATGATGCTGCCGGCCTCGGCCTTGGCGCCGGTGCGGCGA
CGCCGGGCTCGCAGCAGGACTTTACCGTCAACGTCGGCGACCGCATCTTCTTCGATACGGACTCGACTTCGATCCGCGCG
GACGCACAGACGACGCTCGACCGTCAGGCCCAGTGGCTGGCGAAATATCCGAACTATGCGGTCACCATCGAAGGCCATGC
GGACGAGCGCGGTACCCGCGAATACAACCTCGCGCTCGGCGCCCGCCGTGCTGCCGCGACCCGCGACTATCTCGTCAGCC
GCGGCGTGCCGGGCAACCGTATGCGCACGATCTCCTACGGCAAGGAAAAGCCGGTCGCGGTCTGCGACGACATCTCCTGC
TGGTCGCAGAACCGCCGCGCGGTTACCGTTCTCGGCGGCGCCGGAAGCTGA

Upstream 100 bases:

>100_bases
GATTGTCGATTCGTTAACCATGCTTGTTGAAAAGCAATTAACCGCTTCCGGTTACAGTCTGGCAACCGTGAATTTGACAC
TTCTCAAGGAGACCCGGCCC

Downstream 100 bases:

>100_bases
TCAGCCTCGTATCGAGGGGGAATTCGAGGGCGGTCTCAAGGGCCGCCCTTTGTTTTTTACCACACTTTGGCCGAACTCCG
TTGCTTTTTCACGGCAGTTG

Product: peptidoglycan-associated lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSRIDAPAASRMQTIARNPIMIALVMTLALAGCASKKNLPNDAAGLGLGAGAATPGSQQDFTVNVGDRIFFDTDSTSIRA
DAQTTLDRQAQWLAKYPNYAVTIEGHADERGTREYNLALGARRAAATRDYLVSRGVPGNRMRTISYGKEKPVAVCDDISC
WSQNRRAVTVLGGAGS

Sequences:

>Translated_176_residues
MSRIDAPAASRMQTIARNPIMIALVMTLALAGCASKKNLPNDAAGLGLGAGAATPGSQQDFTVNVGDRIFFDTDSTSIRA
DAQTTLDRQAQWLAKYPNYAVTIEGHADERGTREYNLALGARRAAATRDYLVSRGVPGNRMRTISYGKEKPVAVCDDISC
WSQNRRAVTVLGGAGS
>Mature_175_residues
SRIDAPAASRMQTIARNPIMIALVMTLALAGCASKKNLPNDAAGLGLGAGAATPGSQQDFTVNVGDRIFFDTDSTSIRAD
AQTTLDRQAQWLAKYPNYAVTIEGHADERGTREYNLALGARRAAATRDYLVSRGVPGNRMRTISYGKEKPVAVCDDISCW
SQNRRAVTVLGGAGS

Specific function: Thought To Play A Role In Bacterial Envelope Integrity. Very Strongly Associated With The Peptidoglycan. [C]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=164, Percent_Identity=41.4634146341463, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI48994946, Length=123, Percent_Identity=29.2682926829268, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 18749; Mature: 18618

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRIDAPAASRMQTIARNPIMIALVMTLALAGCASKKNLPNDAAGLGLGAGAATPGSQQD
CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
FTVNVGDRIFFDTDSTSIRADAQTTLDRQAQWLAKYPNYAVTIEGHADERGTREYNLALG
EEEECCCEEEEECCCCEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEEC
ARRAAATRDYLVSRGVPGNRMRTISYGKEKPVAVCDDISCWSQNRRAVTVLGGAGS
CHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEECCCHHHCCCCEEEEEECCCCC
>Mature Secondary Structure 
SRIDAPAASRMQTIARNPIMIALVMTLALAGCASKKNLPNDAAGLGLGAGAATPGSQQD
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
FTVNVGDRIFFDTDSTSIRADAQTTLDRQAQWLAKYPNYAVTIEGHADERGTREYNLALG
EEEECCCEEEEECCCCEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEEC
ARRAAATRDYLVSRGVPGNRMRTISYGKEKPVAVCDDISCWSQNRRAVTVLGGAGS
CHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEECCCHHHCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]