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The map label for this gene is yfkH [H]

Identifier: 150397725

GI number: 150397725

Start: 2626168

End: 2627040

Strand: Reverse

Name: yfkH [H]

Synonym: Smed_2527

Alternate gene names: 150397725

Gene position: 2627040-2626168 (Counterclockwise)

Preceding gene: 150397733

Following gene: 150397723

Centisome position: 69.46

GC content: 60.25

Gene sequence:

>873_bases
ATGCCGGTCATACGCATCATCTGGAAGGTCGTATTCGATGCACTCTGGCATTTTAGCGAGGATGACGGCTGGGCGATGGC
CAGTCATGTGGCCCTATCTTCGCTGATGGCCGTTTTTCCCTTCCTGATTTTCGGCACGGCACTCGCCAGCTTCCTGGGGG
CCGATCAATTCGCCGAGACGGCAGTCCACCTGATCTTCGACACATGGCCCGAATCGATTGCCAAACCGGTCGCCGACGAG
GTGGTGCGCGTCTTGACTATACCGCGCGGCAGCCTGCTTACGATCTCGGTTCTTGCCGCGGCCTATTTCGCCTCGAACGG
CGTCGAAGCGTTGAGGATCGCGCTCAATCGCGCTTACAGGGTCGCCGAAAGCCGCTCCTGGTACGTGACCCGGCTTTCGA
GCCTCGGCTTCGTGCTCGGTGCCGTGCTCATTCTCGCCGCTCTCAGCCTTCTGCTGGTGGCGGTGCCTCTGGCGGTGCGC
AATGCGGATCAGTGGTTTCCCTGGCTGGATACGGTTATGGCGGCGGTGGACGATTGGGGGCTGACGCTGACTCTGGCCAT
GCTCACGGCCGGCCTGCTCGTCGCGCATTTGTGGCTGCCGTCCGGTCACCGCAACATCGTCGACGTATTGCCGGGAATTT
TCCTCACGCTCGTGCTCTGGTCCGTGGGCGGTTACGCTTTCGCCTCCTATATCGCCAATTTTTCAAGCTATGCCACGACC
TATGCGGGGCTCGCCTCGATCATGGTCGTGCTGGTATTTCTCTATATGCTCGGCGCGATCTTCATCATCGGCGCGGAAAT
CAACGCCGCCATTCTGAAATACAAGGTGAAGCTCATGGTCAGGCGCAGTTTCCAGGCCGGTCGCGGCGAGTAG

Upstream 100 bases:

>100_bases
GCATGGGGGTTGGCCGGACCGGAGATGGTCAAGGCCGGCCTCGAATACCACGCCGGCTGGTCCTTCCTGGAGCGGAACCG
GTGGAAGAATCGGAGACGGA

Downstream 100 bases:

>100_bases
ATCTCTATCGGCTTATCTCATTGCTCGCCGAGAACCATCGCCCTGATATCTGCAGGCCCGTGCCCGGCAGCCCGAAAAGC
GGCAATGCCGGTGTCGCGGT

Product: putative ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MPVIRIIWKVVFDALWHFSEDDGWAMASHVALSSLMAVFPFLIFGTALASFLGADQFAETAVHLIFDTWPESIAKPVADE
VVRVLTIPRGSLLTISVLAAAYFASNGVEALRIALNRAYRVAESRSWYVTRLSSLGFVLGAVLILAALSLLLVAVPLAVR
NADQWFPWLDTVMAAVDDWGLTLTLAMLTAGLLVAHLWLPSGHRNIVDVLPGIFLTLVLWSVGGYAFASYIANFSSYATT
YAGLASIMVVLVFLYMLGAIFIIGAEINAAILKYKVKLMVRRSFQAGRGE

Sequences:

>Translated_290_residues
MPVIRIIWKVVFDALWHFSEDDGWAMASHVALSSLMAVFPFLIFGTALASFLGADQFAETAVHLIFDTWPESIAKPVADE
VVRVLTIPRGSLLTISVLAAAYFASNGVEALRIALNRAYRVAESRSWYVTRLSSLGFVLGAVLILAALSLLLVAVPLAVR
NADQWFPWLDTVMAAVDDWGLTLTLAMLTAGLLVAHLWLPSGHRNIVDVLPGIFLTLVLWSVGGYAFASYIANFSSYATT
YAGLASIMVVLVFLYMLGAIFIIGAEINAAILKYKVKLMVRRSFQAGRGE
>Mature_289_residues
PVIRIIWKVVFDALWHFSEDDGWAMASHVALSSLMAVFPFLIFGTALASFLGADQFAETAVHLIFDTWPESIAKPVADEV
VRVLTIPRGSLLTISVLAAAYFASNGVEALRIALNRAYRVAESRSWYVTRLSSLGFVLGAVLILAALSLLLVAVPLAVRN
ADQWFPWLDTVMAAVDDWGLTLTLAMLTAGLLVAHLWLPSGHRNIVDVLPGIFLTLVLWSVGGYAFASYIANFSSYATTY
AGLASIMVVLVFLYMLGAIFIIGAEINAAILKYKVKLMVRRSFQAGRGE

Specific function: Unknown

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.13.1

Molecular weight: Translated: 31631; Mature: 31499

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVIRIIWKVVFDALWHFSEDDGWAMASHVALSSLMAVFPFLIFGTALASFLGADQFAET
CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
AVHLIFDTWPESIAKPVADEVVRVLTIPRGSLLTISVLAAAYFASNGVEALRIALNRAYR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VAESRSWYVTRLSSLGFVLGAVLILAALSLLLVAVPLAVRNADQWFPWLDTVMAAVDDWG
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHCCH
LTLTLAMLTAGLLVAHLWLPSGHRNIVDVLPGIFLTLVLWSVGGYAFASYIANFSSYATT
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YAGLASIMVVLVFLYMLGAIFIIGAEINAAILKYKVKLMVRRSFQAGRGE
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PVIRIIWKVVFDALWHFSEDDGWAMASHVALSSLMAVFPFLIFGTALASFLGADQFAET
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
AVHLIFDTWPESIAKPVADEVVRVLTIPRGSLLTISVLAAAYFASNGVEALRIALNRAYR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VAESRSWYVTRLSSLGFVLGAVLILAALSLLLVAVPLAVRNADQWFPWLDTVMAAVDDWG
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHCCH
LTLTLAMLTAGLLVAHLWLPSGHRNIVDVLPGIFLTLVLWSVGGYAFASYIANFSSYATT
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YAGLASIMVVLVFLYMLGAIFIIGAEINAAILKYKVKLMVRRSFQAGRGE
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]