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The map label for this gene is 150397624

Identifier: 150397624

GI number: 150397624

Start: 2502491

End: 2502889

Strand: Direct

Name: 150397624

Synonym: Smed_2424

Alternate gene names: NA

Gene position: 2502491-2502889 (Clockwise)

Preceding gene: 150397623

Following gene: 150397625

Centisome position: 66.17

GC content: 59.15

Gene sequence:

>399_bases
ATGCGAATTGCATTTGCTGCCCTGTATTTTTCGGCGTCTTTTTCAGCACTTTCGCTCTGTCCCACCGCCGCGCTCGCCCA
GGAGGGCGATGCCGAGGCCGGCGCTACTGTCTTCAAGAGATGCGCCACCTGCCATGTCATCGACGAGGACCAGAACAAGG
TCGGCCCTTCGCTGAAGGGCATCATGGGCAGGACGGCCGGCACCCACCCGGATTTCAAGTATTCGCAAGCCATGGTCGAT
GCGGGCAAGGGTGGCCTCGTCTGGGACGAAGCGACTCTGGCCGACTATCTCCGCAATCCGAGGGCCAAGGTCAAAGGCAC
CAAAATGGTTTTCCCCGGCCTGAAGAAGGACGAGGAGCTTGCCAACGTTATCGCCTACCTGAAGCAGCATTCCCAATAG

Upstream 100 bases:

>100_bases
CAACCGCCCCGGCGCGCCATTCCTGAAGTGAAGCAAGCACCGCCAAGCAGATTGACGATGGCCTTCCTTGCCCCGCGCCG
GGCGAAATTGAGGAAGTATC

Downstream 100 bases:

>100_bases
GAATACTTGCGGAAGAGAGAAGTCGATCTCTTGCCGATGAATTGCCAGTATTTTCCGTTCGTGTAATAATTGTGATCGGA
ACTCTGCGGATTGCGTATTC

Product: cytochrome c class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MRIAFAALYFSASFSALSLCPTAALAQEGDAEAGATVFKRCATCHVIDEDQNKVGPSLKGIMGRTAGTHPDFKYSQAMVD
AGKGGLVWDEATLADYLRNPRAKVKGTKMVFPGLKKDEELANVIAYLKQHSQ

Sequences:

>Translated_132_residues
MRIAFAALYFSASFSALSLCPTAALAQEGDAEAGATVFKRCATCHVIDEDQNKVGPSLKGIMGRTAGTHPDFKYSQAMVD
AGKGGLVWDEATLADYLRNPRAKVKGTKMVFPGLKKDEELANVIAYLKQHSQ
>Mature_132_residues
MRIAFAALYFSASFSALSLCPTAALAQEGDAEAGATVFKRCATCHVIDEDQNKVGPSLKGIMGRTAGTHPDFKYSQAMVD
AGKGGLVWDEATLADYLRNPRAKVKGTKMVFPGLKKDEELANVIAYLKQHSQ

Specific function: Cytochrome c2 is found mainly in purple, non-sulfur, photosynthetic bacteria where it functions as the electron donor to the oxidized bacteriochlorophyll in the photophosphorylation pathway. However, it may also have a role in the respiratory chain and is

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=103, Percent_Identity=42.7184466019417, Blast_Score=94, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17539604, Length=104, Percent_Identity=48.0769230769231, Blast_Score=99, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17566554, Length=102, Percent_Identity=47.0588235294118, Blast_Score=98, Evalue=9e-22,
Organism=Saccharomyces cerevisiae, GI6320796, Length=101, Percent_Identity=43.5643564356436, Blast_Score=91, Evalue=6e-20,
Organism=Saccharomyces cerevisiae, GI6322508, Length=103, Percent_Identity=42.7184466019417, Blast_Score=90, Evalue=1e-19,
Organism=Drosophila melanogaster, GI17137204, Length=104, Percent_Identity=46.1538461538462, Blast_Score=95, Evalue=1e-20,
Organism=Drosophila melanogaster, GI17137228, Length=107, Percent_Identity=44.8598130841121, Blast_Score=92, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 14197; Mature: 14197

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIAFAALYFSASFSALSLCPTAALAQEGDAEAGATVFKRCATCHVIDEDQNKVGPSLKG
CCHHHHHHHHHHCCHHHHHCCHHHHHCCCCCCHHHHHHHHHHHCEEECCCCCCCCCHHHH
IMGRTAGTHPDFKYSQAMVDAGKGGLVWDEATLADYLRNPRAKVKGTKMVFPGLKKDEEL
HHCCCCCCCCCCHHHHHHHHCCCCCEEECHHHHHHHHHCCCCCCCCCEEECCCCCCHHHH
ANVIAYLKQHSQ
HHHHHHHHHCCC
>Mature Secondary Structure
MRIAFAALYFSASFSALSLCPTAALAQEGDAEAGATVFKRCATCHVIDEDQNKVGPSLKG
CCHHHHHHHHHHCCHHHHHCCHHHHHCCCCCCHHHHHHHHHHHCEEECCCCCCCCCHHHH
IMGRTAGTHPDFKYSQAMVDAGKGGLVWDEATLADYLRNPRAKVKGTKMVFPGLKKDEEL
HHCCCCCCCCCCHHHHHHHHCCCCCEEECHHHHHHHHHCCCCCCCCCEEECCCCCCHHHH
ANVIAYLKQHSQ
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA