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The map label for this gene is ycjP [C]

Identifier: 150397556

GI number: 150397556

Start: 2431813

End: 2432643

Strand: Reverse

Name: ycjP [C]

Synonym: Smed_2356

Alternate gene names: 150397556

Gene position: 2432643-2431813 (Counterclockwise)

Preceding gene: 150397557

Following gene: 150397555

Centisome position: 64.32

GC content: 58.72

Gene sequence:

>831_bases
ATGGCACGCAATGTTTCCACCGGGCGGAAGCTCATTACCACCGTGGTGGCCTGGACGATCGGAATCCTCATCTTTTTCCC
GATCCTCTGGACATTCCTGACGAGCTTCAAGACGGAAGCCCAGGCGATTGCTTCGCCGCCGGTCTTCCTCTTCTTCGACT
GGACGACCGAAAACTATGCCGAGGTGCAGAGCCGGTCGGACTATCTGAAGCACTTCATGAATTCGGTGATCGTTTCCTTC
GGCTCGACGCTGCTGGGCCTGCTGATCGCGATCCCCTCGGCCTGGGCGATGGCATTCTCGCCGACGAAGCGCACCAAGGA
CGTGCTGATGTGGATGCTCTCCACAAAGATGATGCCGCCCGTCGGCGTGCTGGTGCCGATGTATCTGATATTCCGCAACT
GGGGCCTGCTCGACACACGGACGGGATTGGTGATCGTGCTGACGCTGATCAATCTGCCGATCATCATCTGGATGCTCTAC
ACCTATTTCAAGGAGATTCCGGGAGAAATCCTCGAAGCGGCGCGTATGGACGGCGCATCGCTCTCCAAGGAGATCATCTA
TGTGCTGACGCCGATGGCGATCCCGGGGATCGCCTCGACGCTGCTCCTCAACATCATCCTTGCCTGGAACGAGGCGTTCT
GGACCCTGAACCTGAGTGCTGCGAAGGCGGCACCGCTCACCGCCTTCATCGCCTCCTATTCGAGCCCTGAAGGACTCTTC
TATGCGAAGCTCTCGGCGGCCTCGACGATGGCGATCGCCCCCATCCTCATTCTCGGCTGGTTCTCGCAAAAACAGCTCGT
ACGCGGTCTCACTTTCGGCGCGGTCAAATAG

Upstream 100 bases:

>100_bases
GCGGCGCCTCGGCGGGCGGGATCATCGCGGTCATTCTCGCCAATATCGTCGCATTCTTCCTGATGCGCATGATCGGCAAG
ACGCTGGAGGCCTGATAGTC

Downstream 100 bases:

>100_bases
GGGCGGCGGTCAAATAGGGGCGGCGCGGTTCAATTAAGGGTAACACCATGGGAAGCATCACTCTCAAGAACGTATCGAAG
GTCTTTGGCGCCCACGCCGT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MARNVSTGRKLITTVVAWTIGILIFFPILWTFLTSFKTEAQAIASPPVFLFFDWTTENYAEVQSRSDYLKHFMNSVIVSF
GSTLLGLLIAIPSAWAMAFSPTKRTKDVLMWMLSTKMMPPVGVLVPMYLIFRNWGLLDTRTGLVIVLTLINLPIIIWMLY
TYFKEIPGEILEAARMDGASLSKEIIYVLTPMAIPGIASTLLLNIILAWNEAFWTLNLSAAKAAPLTAFIASYSSPEGLF
YAKLSAASTMAIAPILILGWFSQKQLVRGLTFGAVK

Sequences:

>Translated_276_residues
MARNVSTGRKLITTVVAWTIGILIFFPILWTFLTSFKTEAQAIASPPVFLFFDWTTENYAEVQSRSDYLKHFMNSVIVSF
GSTLLGLLIAIPSAWAMAFSPTKRTKDVLMWMLSTKMMPPVGVLVPMYLIFRNWGLLDTRTGLVIVLTLINLPIIIWMLY
TYFKEIPGEILEAARMDGASLSKEIIYVLTPMAIPGIASTLLLNIILAWNEAFWTLNLSAAKAAPLTAFIASYSSPEGLF
YAKLSAASTMAIAPILILGWFSQKQLVRGLTFGAVK
>Mature_275_residues
ARNVSTGRKLITTVVAWTIGILIFFPILWTFLTSFKTEAQAIASPPVFLFFDWTTENYAEVQSRSDYLKHFMNSVIVSFG
STLLGLLIAIPSAWAMAFSPTKRTKDVLMWMLSTKMMPPVGVLVPMYLIFRNWGLLDTRTGLVIVLTLINLPIIIWMLYT
YFKEIPGEILEAARMDGASLSKEIIYVLTPMAIPGIASTLLLNIILAWNEAFWTLNLSAAKAAPLTAFIASYSSPEGLFY
AKLSAASTMAIAPILILGWFSQKQLVRGLTFGAVK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=259, Percent_Identity=30.1158301158301, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1790464, Length=214, Percent_Identity=32.2429906542056, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30649; Mature: 30518

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARNVSTGRKLITTVVAWTIGILIFFPILWTFLTSFKTEAQAIASPPVFLFFDWTTENYA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
EVQSRSDYLKHFMNSVIVSFGSTLLGLLIAIPSAWAMAFSPTKRTKDVLMWMLSTKMMPP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
VGVLVPMYLIFRNWGLLDTRTGLVIVLTLINLPIIIWMLYTYFKEIPGEILEAARMDGAS
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCH
LSKEIIYVLTPMAIPGIASTLLLNIILAWNEAFWTLNLSAAKAAPLTAFIASYSSPEGLF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCCCCCCEE
YAKLSAASTMAIAPILILGWFSQKQLVRGLTFGAVK
EEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
ARNVSTGRKLITTVVAWTIGILIFFPILWTFLTSFKTEAQAIASPPVFLFFDWTTENYA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
EVQSRSDYLKHFMNSVIVSFGSTLLGLLIAIPSAWAMAFSPTKRTKDVLMWMLSTKMMPP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
VGVLVPMYLIFRNWGLLDTRTGLVIVLTLINLPIIIWMLYTYFKEIPGEILEAARMDGAS
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCH
LSKEIIYVLTPMAIPGIASTLLLNIILAWNEAFWTLNLSAAKAAPLTAFIASYSSPEGLF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHCCCCCCEE
YAKLSAASTMAIAPILILGWFSQKQLVRGLTFGAVK
EEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]