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The map label for this gene is ycjN [C]

Identifier: 150397515

GI number: 150397515

Start: 2394167

End: 2395534

Strand: Reverse

Name: ycjN [C]

Synonym: Smed_2315

Alternate gene names: 150397515

Gene position: 2395534-2394167 (Counterclockwise)

Preceding gene: 150397516

Following gene: 150397514

Centisome position: 63.34

GC content: 62.06

Gene sequence:

>1368_bases
ATGAAGAATAGATCCAGCCTTGTTGCGGCATCCGGCAAGTCGCGCCGGGAATTTCTCCGCAACGGCGCAACCTTCGCCGC
CGCCGGACTGGCCGGCGGCCTGAGCGGCTTTCCGTTCATCAACCGGCTGCCGGTGCGTGCCCAGGACGCCCCGTTGAAGT
TCTGGCAATTTTACGCGCCCGGCGGCCAGGTGAAGCCGCAGGTCGAATGGTTCGAGAAAACCGTCGCCGATTGGAACGCA
ACGCACGACCAGAAGGTCGAGCTCGAATTCATCCCGAACAAGGAATACATCAACGGTCCGAAGCTCGCGACCGCCTTCGC
CTCCGGTGACGGGCCGGACATCTTCATCATCTCGCCCGGCGACTTCCTGCGCTATTACAATGGCGGGGTTCTGCAAGATC
TGACGCCCTATATCGACGAGAAGGCCCGGGCCGATTTCCCGGAAAGCGTGCTTGCGAACCGTATGGTCGACGGCAAGATC
TTCGGCCTTCCGATGGAAGTCGAGCCGATGGCGATGTTCTACTCCATCAAGGCCTTTGAGGATGCCGGCCTCAATGAGAA
TGACGTGCCGAAGACCTGGGACGAACTGTTGGAACTGGGCAAGAAACTGACCACGCCGGAACGTTATGGCCTGCTGTTCC
AGACCGCGCCGGGCTATTACCAGAACTTCACCTGGTATCCCTTCCTCTGGCAGGGCGGCGGCGAATTCCAGAACGCCGAG
GGAAAAAGCGCGTTCGACTCGCCCGCGACCGTGCAGGCGCTGAAGCTCTGGCAGGATGCCGTGAATTCGGGCGCCGCACC
CCGGCAGGTACTCGGCAACGGCGCCAACGACAGTGTCGCCAATCTCGCCTCCGGCTATTGCGCGATCCAGAATGTCGGTA
TCTGGGCCATTTCCCAATTGAAGAACAACGCCAAGGACTTCCCCTACGGCGTGTTCCGCTTGCCGACGCCGGCGAATGGC
AAGTACGTCACAGTCGGCGGCGGATGGGCTTTCGTCGCCAATTCCAAAGGCAAGAACCCGGAAGCTGCCGGGCAGTTCTG
CGCCTGGGCGCTGGCATCGATGGATCAAGGCTCGATCGATCGTGTCGCGAGCTGGTGCACCGAAGCGAAATCCGACATGC
CCCCGCGCGACAGCGCTCTGAAAGCACGTGAAGCGGCATTCAGCGAAGGCATAATCGGCCAGTTCGCCAAAGAGATTCAC
CCGGGTACGCGCGCCGAGCCGCGGGTGCCGCCGGAAGTCTACAAGATCATCTCGGACGCCGTACAACAGGCCATGCTCGG
TGGCGCCGACCCGCAGGCGACCGCGACCACGGCCTCGCAGCGGCTCGACGCCTACCTGGCCTCCTATTCCGGCGCGCCGA
TTCTTTAA

Upstream 100 bases:

>100_bases
GTCGTTTCATGCGTGCTGCGGGAGTTCGAGACAGCGTGACATCGCTCAAGTGAGGCGGCCCTGAGGAGAGGGCCTGAACA
AGTGTGAGAGGGAGGTACCA

Downstream 100 bases:

>100_bases
TCCTCCCCGGGGGCGGCCGCTCCGGTTTTCAAACCCGGCGGCCGCCCAGCACGTCCAGGAAAGCGCACGAGGCTTTCCAT
CCGGACGTGTGCATTTTCAA

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MKNRSSLVAASGKSRREFLRNGATFAAAGLAGGLSGFPFINRLPVRAQDAPLKFWQFYAPGGQVKPQVEWFEKTVADWNA
THDQKVELEFIPNKEYINGPKLATAFASGDGPDIFIISPGDFLRYYNGGVLQDLTPYIDEKARADFPESVLANRMVDGKI
FGLPMEVEPMAMFYSIKAFEDAGLNENDVPKTWDELLELGKKLTTPERYGLLFQTAPGYYQNFTWYPFLWQGGGEFQNAE
GKSAFDSPATVQALKLWQDAVNSGAAPRQVLGNGANDSVANLASGYCAIQNVGIWAISQLKNNAKDFPYGVFRLPTPANG
KYVTVGGGWAFVANSKGKNPEAAGQFCAWALASMDQGSIDRVASWCTEAKSDMPPRDSALKAREAAFSEGIIGQFAKEIH
PGTRAEPRVPPEVYKIISDAVQQAMLGGADPQATATTASQRLDAYLASYSGAPIL

Sequences:

>Translated_455_residues
MKNRSSLVAASGKSRREFLRNGATFAAAGLAGGLSGFPFINRLPVRAQDAPLKFWQFYAPGGQVKPQVEWFEKTVADWNA
THDQKVELEFIPNKEYINGPKLATAFASGDGPDIFIISPGDFLRYYNGGVLQDLTPYIDEKARADFPESVLANRMVDGKI
FGLPMEVEPMAMFYSIKAFEDAGLNENDVPKTWDELLELGKKLTTPERYGLLFQTAPGYYQNFTWYPFLWQGGGEFQNAE
GKSAFDSPATVQALKLWQDAVNSGAAPRQVLGNGANDSVANLASGYCAIQNVGIWAISQLKNNAKDFPYGVFRLPTPANG
KYVTVGGGWAFVANSKGKNPEAAGQFCAWALASMDQGSIDRVASWCTEAKSDMPPRDSALKAREAAFSEGIIGQFAKEIH
PGTRAEPRVPPEVYKIISDAVQQAMLGGADPQATATTASQRLDAYLASYSGAPIL
>Mature_455_residues
MKNRSSLVAASGKSRREFLRNGATFAAAGLAGGLSGFPFINRLPVRAQDAPLKFWQFYAPGGQVKPQVEWFEKTVADWNA
THDQKVELEFIPNKEYINGPKLATAFASGDGPDIFIISPGDFLRYYNGGVLQDLTPYIDEKARADFPESVLANRMVDGKI
FGLPMEVEPMAMFYSIKAFEDAGLNENDVPKTWDELLELGKKLTTPERYGLLFQTAPGYYQNFTWYPFLWQGGGEFQNAE
GKSAFDSPATVQALKLWQDAVNSGAAPRQVLGNGANDSVANLASGYCAIQNVGIWAISQLKNNAKDFPYGVFRLPTPANG
KYVTVGGGWAFVANSKGKNPEAAGQFCAWALASMDQGSIDRVASWCTEAKSDMPPRDSALKAREAAFSEGIIGQFAKEIH
PGTRAEPRVPPEVYKIISDAVQQAMLGGADPQATATTASQRLDAYLASYSGAPIL

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 49419; Mature: 49419

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNRSSLVAASGKSRREFLRNGATFAAAGLAGGLSGFPFINRLPVRAQDAPLKFWQFYAP
CCCCCCEEECCCHHHHHHHHCCCCEEHHHHHCCCCCCCHHHCCCCCCCCCCCEEEEEECC
GGQVKPQVEWFEKTVADWNATHDQKVELEFIPNKEYINGPKLATAFASGDGPDIFIISPG
CCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEECCC
DFLRYYNGGVLQDLTPYIDEKARADFPESVLANRMVDGKIFGLPMEVEPMAMFYSIKAFE
HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEECCCCCCCHHHHEEEEHHHH
DAGLNENDVPKTWDELLELGKKLTTPERYGLLFQTAPGYYQNFTWYPFLWQGGGEFQNAE
CCCCCCCCCCHHHHHHHHHHHHCCCHHHHCEEEECCCCHHHCCCEEEEEECCCCCCCCCC
GKSAFDSPATVQALKLWQDAVNSGAAPRQVLGNGANDSVANLASGYCAIQNVGIWAISQL
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHCCHHEECCCHHHHHHH
KNNAKDFPYGVFRLPTPANGKYVTVGGGWAFVANSKGKNPEAAGQFCAWALASMDQGSID
HCCCCCCCCEEEECCCCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHH
RVASWCTEAKSDMPPRDSALKAREAAFSEGIIGQFAKEIHPGTRAEPRVPPEVYKIISDA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
VQQAMLGGADPQATATTASQRLDAYLASYSGAPIL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKNRSSLVAASGKSRREFLRNGATFAAAGLAGGLSGFPFINRLPVRAQDAPLKFWQFYAP
CCCCCCEEECCCHHHHHHHHCCCCEEHHHHHCCCCCCCHHHCCCCCCCCCCCEEEEEECC
GGQVKPQVEWFEKTVADWNATHDQKVELEFIPNKEYINGPKLATAFASGDGPDIFIISPG
CCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEECCC
DFLRYYNGGVLQDLTPYIDEKARADFPESVLANRMVDGKIFGLPMEVEPMAMFYSIKAFE
HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEECCCCCCCHHHHEEEEHHHH
DAGLNENDVPKTWDELLELGKKLTTPERYGLLFQTAPGYYQNFTWYPFLWQGGGEFQNAE
CCCCCCCCCCHHHHHHHHHHHHCCCHHHHCEEEECCCCHHHCCCEEEEEECCCCCCCCCC
GKSAFDSPATVQALKLWQDAVNSGAAPRQVLGNGANDSVANLASGYCAIQNVGIWAISQL
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHCCHHEECCCHHHHHHH
KNNAKDFPYGVFRLPTPANGKYVTVGGGWAFVANSKGKNPEAAGQFCAWALASMDQGSID
HCCCCCCCCEEEECCCCCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHH
RVASWCTEAKSDMPPRDSALKAREAAFSEGIIGQFAKEIHPGTRAEPRVPPEVYKIISDA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
VQQAMLGGADPQATATTASQRLDAYLASYSGAPIL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA