Click here to switch to the map view.

The map label for this gene is clpS [H]

Identifier: 150397465

GI number: 150397465

Start: 2342797

End: 2343102

Strand: Reverse

Name: clpS [H]

Synonym: Smed_2265

Alternate gene names: 150397465

Gene position: 2343102-2342797 (Counterclockwise)

Preceding gene: 150397467

Following gene: 150397461

Centisome position: 61.96

GC content: 58.82

Gene sequence:

>306_bases
ATGAGCGAAAACGACGTAGCCGCAAAGCGCCTGACGAGGCTGAAACCGGAGCGGCCAAAGCTATATAAGGTCCTGCTCGT
CAATGATGACTACACGCCGCGGGAATTCGTGGTCATGGTGCTCAAGGCCATTTTTCGGATGAGCGAGGAGGCCGGCTACC
GCGTAATGATGACGGCTCACAAGCTCGGCACGTCGGTTGTTGTGGTGTGCGAGAAGGATGTGGCGGAGACAAAGGCCAAG
GAGGCGACCGACCTTGGCAAGGAGGCAGGCTTTCCGCTGCTGTTCACGGCGGAGCCGGAGGATTGA

Upstream 100 bases:

>100_bases
GATATTGACGAAAGCGGGACGAAGAAGACTCACGCGGTCTTCCGCCCGCCGTTCGCGTGGTCGCTAAGGCTTTTCTCATG
TCATCGACGGCGGATTTCCG

Downstream 100 bases:

>100_bases
GGCAGCGGCGGCGGTCCGCTTATCATTCCCCTTTCGTCCCGAACAGCTTCTTCAGCATATCGGCCATGGGCCCCGTAGTT
GGCAGCTTCTTCGGTTGAAC

Product: ATP-dependent Clp protease adaptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 101; Mature: 100

Protein sequence:

>101_residues
MSENDVAAKRLTRLKPERPKLYKVLLVNDDYTPREFVVMVLKAIFRMSEEAGYRVMMTAHKLGTSVVVVCEKDVAETKAK
EATDLGKEAGFPLLFTAEPED

Sequences:

>Translated_101_residues
MSENDVAAKRLTRLKPERPKLYKVLLVNDDYTPREFVVMVLKAIFRMSEEAGYRVMMTAHKLGTSVVVVCEKDVAETKAK
EATDLGKEAGFPLLFTAEPED
>Mature_100_residues
SENDVAAKRLTRLKPERPKLYKVLLVNDDYTPREFVVMVLKAIFRMSEEAGYRVMMTAHKLGTSVVVVCEKDVAETKAKE
ATDLGKEAGFPLLFTAEPED

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation [H]

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family [H]

Homologues:

Organism=Escherichia coli, GI1787108, Length=85, Percent_Identity=43.5294117647059, Blast_Score=67, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719 [H]

Pfam domain/function: PF02617 ClpS [H]

EC number: NA

Molecular weight: Translated: 11378; Mature: 11247

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENDVAAKRLTRLKPERPKLYKVLLVNDDYTPREFVVMVLKAIFRMSEEAGYRVMMTAH
CCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
KLGTSVVVVCEKDVAETKAKEATDLGKEAGFPLLFTAEPED
CCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
>Mature Secondary Structure 
SENDVAAKRLTRLKPERPKLYKVLLVNDDYTPREFVVMVLKAIFRMSEEAGYRVMMTAH
CCCHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
KLGTSVVVVCEKDVAETKAKEATDLGKEAGFPLLFTAEPED
CCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]