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The map label for this gene is acoR [H]

Identifier: 150397461

GI number: 150397461

Start: 2338448

End: 2339404

Strand: Reverse

Name: acoR [H]

Synonym: Smed_2261

Alternate gene names: 150397461

Gene position: 2339404-2338448 (Counterclockwise)

Preceding gene: 150397465

Following gene: 150397460

Centisome position: 61.86

GC content: 66.88

Gene sequence:

>957_bases
ATGCCTTCAATAAGGGACCATACCGAACGCGTCTACCGGGTGGCACATCAATCCTCTGCTGCCGTGATTTCGCCGGTGGC
CGCATCATGGCGCCGCTGCATGACGCTGCACGGACTGGCGCCGGAGGAAGCGCGCGCGCCCTGGCGGCTTTCGGACGCCG
AGTTCCGGCAGGCGCGCGAAAACGCAGGCACATTGATCGCGGAGGCGGCCGGCGAGCTCGACCGGCTGTTCGCCACCGTC
GGCAAGGCCGGGTGCTGCCTGCTGCTTACCGACGGGAAGGGCGTTGCGCTGGAACGCCGGGGGGCCGGCGGTGACGATGC
CGACTTCCGCGGGATCGGATTATGGTCGGGAACAGTGTGGAGCGAGGCGAGCGTCGGGACGAATGGTATCGGCACGGCGA
TCGCCGACGAGCGTCCAGTGCTCATCCATCGAGGTCAACACTTCCTCAGCCGCAATATCGGCCTGAGTTGTGCCACGGCC
CCGATCCGCGACGAGAGCGGCAGGCTTGCTGCGGCAATCGATATATCCACCTGCCGCGACGACGCTTCCGAGGCGACGCT
TTCGATCCTCTCGCAGGCGGTACGAGATGCCGCTGCACGAATCGAGGCCACTCTCTTCCGGCGCGCTTTCGTTGGCGCCC
GCATCGTGCTCGTGCCGGTCGACCGTGCCGGACCTGCACTGCTTGCCGTCGACCGTGACGATCTCGTTCTTGGCGCTACG
AGGGCCGCCCGGCTGTGGCTCGGGCTCGACGACGAGCGTATCGCCGATGGCGTCCCGGCTTCCGACCTGCTCGAGGGGGA
GCTTTCCGCCGAGCGGGAAGAATTGCCCGACGCAGAGAGGGCGGCTCTGCGCCGCGCCCTGTCACGGGCCAAGGGCAACG
TATCGATGGCGGCCGATCTCCTTGGCATCAGCCGCGCGACCCTCTACCGCAAGATGAAGCGGCTTTCTCTCAACTGA

Upstream 100 bases:

>100_bases
TCCAAGGCGCGGAGCGCGGATTTCAGCCGCATACCGCTTGCGCGCGTTGGCGATGTCGCGGGTCGACAGGCCCGACCACC
GCAATCCAGGGAGGGAGCGA

Downstream 100 bases:

>100_bases
TCGATATGGACGTCGACCTGTCGCAATTCTGAAACAGTCGGCGCCATCAACGGCGGTGCCACCCTATCGGGAACGCGCAT
TCGGTCGCACTCTCCTCCCA

Product: Fis family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MPSIRDHTERVYRVAHQSSAAVISPVAASWRRCMTLHGLAPEEARAPWRLSDAEFRQARENAGTLIAEAAGELDRLFATV
GKAGCCLLLTDGKGVALERRGAGGDDADFRGIGLWSGTVWSEASVGTNGIGTAIADERPVLIHRGQHFLSRNIGLSCATA
PIRDESGRLAAAIDISTCRDDASEATLSILSQAVRDAAARIEATLFRRAFVGARIVLVPVDRAGPALLAVDRDDLVLGAT
RAARLWLGLDDERIADGVPASDLLEGELSAEREELPDAERAALRRALSRAKGNVSMAADLLGISRATLYRKMKRLSLN

Sequences:

>Translated_318_residues
MPSIRDHTERVYRVAHQSSAAVISPVAASWRRCMTLHGLAPEEARAPWRLSDAEFRQARENAGTLIAEAAGELDRLFATV
GKAGCCLLLTDGKGVALERRGAGGDDADFRGIGLWSGTVWSEASVGTNGIGTAIADERPVLIHRGQHFLSRNIGLSCATA
PIRDESGRLAAAIDISTCRDDASEATLSILSQAVRDAAARIEATLFRRAFVGARIVLVPVDRAGPALLAVDRDDLVLGAT
RAARLWLGLDDERIADGVPASDLLEGELSAEREELPDAERAALRRALSRAKGNVSMAADLLGISRATLYRKMKRLSLN
>Mature_317_residues
PSIRDHTERVYRVAHQSSAAVISPVAASWRRCMTLHGLAPEEARAPWRLSDAEFRQARENAGTLIAEAAGELDRLFATVG
KAGCCLLLTDGKGVALERRGAGGDDADFRGIGLWSGTVWSEASVGTNGIGTAIADERPVLIHRGQHFLSRNIGLSCATAP
IRDESGRLAAAIDISTCRDDASEATLSILSQAVRDAAARIEATLFRRAFVGARIVLVPVDRAGPALLAVDRDDLVLGATR
AARLWLGLDDERIADGVPASDLLEGELSAEREELPDAERAALRRALSRAKGNVSMAADLLGISRATLYRKMKRLSLN

Specific function: Required for sigma-54-dependent transcription of acoXABC [H]

COG id: COG3284

COG function: function code QK; Transcriptional activator of acetoin/glycerol metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 34009; Mature: 33878

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSIRDHTERVYRVAHQSSAAVISPVAASWRRCMTLHGLAPEEARAPWRLSDAEFRQARE
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHH
NAGTLIAEAAGELDRLFATVGKAGCCLLLTDGKGVALERRGAGGDDADFRGIGLWSGTVW
HHCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEECCCCC
SEASVGTNGIGTAIADERPVLIHRGQHFLSRNIGLSCATAPIRDESGRLAAAIDISTCRD
CCCCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCCEEECCCCCCCCCCEEEEEEHHHHCC
DASEATLSILSQAVRDAAARIEATLFRRAFVGARIVLVPVDRAGPALLAVDRDDLVLGAT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCCCEEEECH
RAARLWLGLDDERIADGVPASDLLEGELSAEREELPDAERAALRRALSRAKGNVSMAADL
HHHEEEECCCHHHHHCCCCHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHH
LGISRATLYRKMKRLSLN
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PSIRDHTERVYRVAHQSSAAVISPVAASWRRCMTLHGLAPEEARAPWRLSDAEFRQARE
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHH
NAGTLIAEAAGELDRLFATVGKAGCCLLLTDGKGVALERRGAGGDDADFRGIGLWSGTVW
HHCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEECCCCC
SEASVGTNGIGTAIADERPVLIHRGQHFLSRNIGLSCATAPIRDESGRLAAAIDISTCRD
CCCCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCCEEECCCCCCCCCCEEEEEEHHHHCC
DASEATLSILSQAVRDAAARIEATLFRRAFVGARIVLVPVDRAGPALLAVDRDDLVLGAT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCCCEEEECH
RAARLWLGLDDERIADGVPASDLLEGELSAEREELPDAERAALRRALSRAKGNVSMAADL
HHHEEEECCCHHHHHCCCCHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHH
LGISRATLYRKMKRLSLN
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1378052 [H]