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The map label for this gene is ydcO [H]

Identifier: 150397462

GI number: 150397462

Start: 2339662

End: 2340894

Strand: Direct

Name: ydcO [H]

Synonym: Smed_2262

Alternate gene names: 150397462

Gene position: 2339662-2340894 (Clockwise)

Preceding gene: 150397457

Following gene: 150397463

Centisome position: 61.86

GC content: 65.45

Gene sequence:

>1233_bases
GTGCTACTCGAGACGATATTCTCGACTCGTCGCAACATCCGGTTGTCCGCAATGCTTCGTGATTTTTCCATCCAAAGCCT
GTTCATGGGCGTGCTGGTCGCATTTGTGGGTTTCGCCAGCTCCTTCGCCGTGGTCCTGCACGGGATCACCGGCGTCGGCG
CAAGCGAGGCGCAGGCGGCCTCCGGCCTCATGGCGCTGTCGATTTCCATGGGCATCTGCGCCGTCATCGTCAGCGCCGTC
ACGCGCCTTCCCGTCAGCATCGCCTGGTCGACCCCGGGCGCGGCCCTGCTCGCGAGTTCCGGCGCGGTCGAGGGCGGGTT
CAACGCCGCCGTCGGCGCCTTCCTCGTCTGCGGGTTGCTGATCGTAATCGCCGGCCTGTGGAAGCCGCTCGGCAGGATCG
TGTCCGCAATCCCGGCTGCGCTGGCGAATGCGATGCTTGCCGGCGTTCTCCTGAGCCTGTGCTTCGCGCCGGTTAAGGCG
GTCGCCTTCAACCCGTTTTTCGGCCTTCCGATCGTTCTTGCCTGGGCGGTCGTCGGCAGCGTCAACAGGCTCTACGCCGT
TCCGGCTGCGCTGGTCGCCTTCGTTCTTGTCGTCGGGTTTGGCGTGGACATGCCGGACGGCGCCCTGGCCGGGCTCTCCG
CCGCGCTTGTTCCAAAGCCGGAGGTCGTTTCGCCTACCTTCAGCGCTTCCGCCTTGGTCAGCATCGCGATTCCGCTTTTC
ATCGTTACGATGGCGTCGCAAAACATTCCCGGCATCGCAGTGCTGAAGGTGAATGATTATCACCCCGATCCGGGACCCCT
CTTTGCCGCGACCGGGCTCTTTTCGCTGCTGAGCGCACCTTTCGGCGGGCATGCGGTCAATCTTGCGGCGATCACAGCGG
CGATGTGCGCCGGTTCCGATTCCCATCCCGACCGCACCCGCCGCTACTGGTCCGCGATCATTGCCGGCTTTGCCTACGTC
GTCTTCGGCCTCCTGGCGGGCGCCGTCACGACCTTTGTCAGCCTTGCGCCTTCGGTTCTGATCGAGGCGGTCGCCGGCCT
TGCGCTGATCGGCGCCTTTTCGAGCTCAGCCGTGGCCGCCTTCACGGAAGCGGAGACGCGCGAAGCTGCCGCCATCACCT
TTCTCGTCACCGCATCGGGCGTCGGTTTTGCGGGCGTGTCCGGGGCCTTTTGGGGGCTTGCGGCGGGTGGCCTGATCCTG
GCACTCGCGCGCTTCGCCAAACGCAGGACCTGA

Upstream 100 bases:

>100_bases
GCCCACTATAGGCATCGATGCCGCAGGAGGTCCACCCGGACGAAAGTCTTTCGTCAATCCCTGACGGCGTCGACAGGCGG
TATCGGCAGAGGGGAAGGAT

Downstream 100 bases:

>100_bases
TGCGCAATTTCCCGGGACCGCCGCGGTTTCGGGACGACACGCGCCGTATAAGTGCCTGACCCGCCATGCCTTGCATTTCC
GCCGGTTCTCGGCTATGGAC

Product: benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MLLETIFSTRRNIRLSAMLRDFSIQSLFMGVLVAFVGFASSFAVVLHGITGVGASEAQAASGLMALSISMGICAVIVSAV
TRLPVSIAWSTPGAALLASSGAVEGGFNAAVGAFLVCGLLIVIAGLWKPLGRIVSAIPAALANAMLAGVLLSLCFAPVKA
VAFNPFFGLPIVLAWAVVGSVNRLYAVPAALVAFVLVVGFGVDMPDGALAGLSAALVPKPEVVSPTFSASALVSIAIPLF
IVTMASQNIPGIAVLKVNDYHPDPGPLFAATGLFSLLSAPFGGHAVNLAAITAAMCAGSDSHPDRTRRYWSAIIAGFAYV
VFGLLAGAVTTFVSLAPSVLIEAVAGLALIGAFSSSAVAAFTEAETREAAAITFLVTASGVGFAGVSGAFWGLAAGGLIL
ALARFAKRRT

Sequences:

>Translated_410_residues
MLLETIFSTRRNIRLSAMLRDFSIQSLFMGVLVAFVGFASSFAVVLHGITGVGASEAQAASGLMALSISMGICAVIVSAV
TRLPVSIAWSTPGAALLASSGAVEGGFNAAVGAFLVCGLLIVIAGLWKPLGRIVSAIPAALANAMLAGVLLSLCFAPVKA
VAFNPFFGLPIVLAWAVVGSVNRLYAVPAALVAFVLVVGFGVDMPDGALAGLSAALVPKPEVVSPTFSASALVSIAIPLF
IVTMASQNIPGIAVLKVNDYHPDPGPLFAATGLFSLLSAPFGGHAVNLAAITAAMCAGSDSHPDRTRRYWSAIIAGFAYV
VFGLLAGAVTTFVSLAPSVLIEAVAGLALIGAFSSSAVAAFTEAETREAAAITFLVTASGVGFAGVSGAFWGLAAGGLIL
ALARFAKRRT
>Mature_410_residues
MLLETIFSTRRNIRLSAMLRDFSIQSLFMGVLVAFVGFASSFAVVLHGITGVGASEAQAASGLMALSISMGICAVIVSAV
TRLPVSIAWSTPGAALLASSGAVEGGFNAAVGAFLVCGLLIVIAGLWKPLGRIVSAIPAALANAMLAGVLLSLCFAPVKA
VAFNPFFGLPIVLAWAVVGSVNRLYAVPAALVAFVLVVGFGVDMPDGALAGLSAALVPKPEVVSPTFSASALVSIAIPLF
IVTMASQNIPGIAVLKVNDYHPDPGPLFAATGLFSLLSAPFGGHAVNLAAITAAMCAGSDSHPDRTRRYWSAIIAGFAYV
VFGLLAGAVTTFVSLAPSVLIEAVAGLALIGAFSSSAVAAFTEAETREAAAITFLVTASGVGFAGVSGAFWGLAAGGLIL
ALARFAKRRT

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=396, Percent_Identity=36.8686868686869, Blast_Score=223, Evalue=2e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 41384; Mature: 41384

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLLETIFSTRRNIRLSAMLRDFSIQSLFMGVLVAFVGFASSFAVVLHGITGVGASEAQAA
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
SGLMALSISMGICAVIVSAVTRLPVSIAWSTPGAALLASSGAVEGGFNAAVGAFLVCGLL
HHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHH
IVIAGLWKPLGRIVSAIPAALANAMLAGVLLSLCFAPVKAVAFNPFFGLPIVLAWAVVGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
VNRLYAVPAALVAFVLVVGFGVDMPDGALAGLSAALVPKPEVVSPTFSASALVSIAIPLF
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHH
IVTMASQNIPGIAVLKVNDYHPDPGPLFAATGLFSLLSAPFGGHAVNLAAITAAMCAGSD
HHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
SHPDRTRRYWSAIIAGFAYVVFGLLAGAVTTFVSLAPSVLIEAVAGLALIGAFSSSAVAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
FTEAETREAAAITFLVTASGVGFAGVSGAFWGLAAGGLILALARFAKRRT
HHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]