Click here to switch to the map view.

The map label for this gene is ycbL [H]

Identifier: 150397440

GI number: 150397440

Start: 2319581

End: 2320222

Strand: Reverse

Name: ycbL [H]

Synonym: Smed_2240

Alternate gene names: 150397440

Gene position: 2320222-2319581 (Counterclockwise)

Preceding gene: 150397441

Following gene: 150397433

Centisome position: 61.35

GC content: 60.9

Gene sequence:

>642_bases
ATGTTACAGGCAGGCATCATTCCGGTGACGCATTTCGAACAGAACTGTACCGTCCTGTTCGATAGCGAAAGCAAGGAGGG
GGTGGTGGTCGATCCTGGCGGCGACGTCGACATCATTCTGCAGACGGTCCGCGAGAACGGCATCCTGTTGAAGGCAATCT
GGCTCACCCACGGCCATATCGATCACGCCGGTGGCGCCAAGGAGTTGAAAGAAGCGCTAGGCCTGGAGATTGTCGGGCCA
CACAAGGCCGACCTGCCGCTGCTCGAAAGGCTGGAGGATCAGGCGGAGCGCTTCGGTCTCGCCATGAAGGTCCAGAACGT
CGTTCCGGATCGATGGCTGGAAGACGGTGATACCGTCTCCTTCGGCGACCACCTCTTCGAGGTCTTGCACTGCCCGGGAC
ACGCGCCCGGCCACGTGGTCTATTTCAACCGGGCACAGAAATTCGCGCATGTCGGCGACGTGCTCTTTCACGGTTCGATC
GGCCGCACCGACCTGCCGGGCGGCAATCATCAGCAGCTTCTGGATTCGATACGCGACAAGATCCTGCCGCTCGGGGATGA
AGTGGGCTTCATCTGCGGCCATGGCCCAGGGGGGCAGGTCGGTGAAGAGCGCCGTAGCAATCCCTTTTTGCGCGGTCTCT
GA

Upstream 100 bases:

>100_bases
GTCATCCCGCTCGCATATCGCTATAGCTGAGAACGGCCGGGTAAGGGTAGGGCTTCTCGTTCCCAGGTCACCTCATGAGC
AACAGCGAGGCTTGGGTCCA

Downstream 100 bases:

>100_bases
TGGTTCGGTGTAAACTCAAATAAAAGGACGCATGACTTCGCGGTCATGCGTCCTTCGGATAATGCCGCCTCGGTATTCAG
CCTGCGTTGCAGAAATGGCT

Product: beta-lactamase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MLQAGIIPVTHFEQNCTVLFDSESKEGVVVDPGGDVDIILQTVRENGILLKAIWLTHGHIDHAGGAKELKEALGLEIVGP
HKADLPLLERLEDQAERFGLAMKVQNVVPDRWLEDGDTVSFGDHLFEVLHCPGHAPGHVVYFNRAQKFAHVGDVLFHGSI
GRTDLPGGNHQQLLDSIRDKILPLGDEVGFICGHGPGGQVGEERRSNPFLRGL

Sequences:

>Translated_213_residues
MLQAGIIPVTHFEQNCTVLFDSESKEGVVVDPGGDVDIILQTVRENGILLKAIWLTHGHIDHAGGAKELKEALGLEIVGP
HKADLPLLERLEDQAERFGLAMKVQNVVPDRWLEDGDTVSFGDHLFEVLHCPGHAPGHVVYFNRAQKFAHVGDVLFHGSI
GRTDLPGGNHQQLLDSIRDKILPLGDEVGFICGHGPGGQVGEERRSNPFLRGL
>Mature_213_residues
MLQAGIIPVTHFEQNCTVLFDSESKEGVVVDPGGDVDIILQTVRENGILLKAIWLTHGHIDHAGGAKELKEALGLEIVGP
HKADLPLLERLEDQAERFGLAMKVQNVVPDRWLEDGDTVSFGDHLFEVLHCPGHAPGHVVYFNRAQKFAHVGDVLFHGSI
GRTDLPGGNHQQLLDSIRDKILPLGDEVGFICGHGPGGQVGEERRSNPFLRGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. Glyoxalase II family [H]

Homologues:

Organism=Homo sapiens, GI41327741, Length=210, Percent_Identity=29.5238095238095, Blast_Score=71, Evalue=9e-13,
Organism=Escherichia coli, GI1787158, Length=206, Percent_Identity=50.4854368932039, Blast_Score=213, Evalue=1e-56,
Organism=Caenorhabditis elegans, GI17538952, Length=193, Percent_Identity=29.0155440414508, Blast_Score=70, Evalue=6e-13,
Organism=Drosophila melanogaster, GI221330176, Length=198, Percent_Identity=28.2828282828283, Blast_Score=71, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: NA

Molecular weight: Translated: 23231; Mature: 23231

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQAGIIPVTHFEQNCTVLFDSESKEGVVVDPGGDVDIILQTVRENGILLKAIWLTHGHI
CCCCCCEEEEECCCCCEEEEECCCCCCEEECCCCCHHHHHHHHHHCCEEEEEEEEECCCC
DHAGGAKELKEALGLEIVGPHKADLPLLERLEDQAERFGLAMKVQNVVPDRWLEDGDTVS
CCCCCHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCEEE
FGDHLFEVLHCPGHAPGHVVYFNRAQKFAHVGDVLFHGSIGRTDLPGGNHQQLLDSIRDK
HHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHH
ILPLGDEVGFICGHGPGGQVGEERRSNPFLRGL
HCCCCCCCCEEEECCCCCCCCHHHHCCCCCCCC
>Mature Secondary Structure
MLQAGIIPVTHFEQNCTVLFDSESKEGVVVDPGGDVDIILQTVRENGILLKAIWLTHGHI
CCCCCCEEEEECCCCCEEEEECCCCCCEEECCCCCHHHHHHHHHHCCEEEEEEEEECCCC
DHAGGAKELKEALGLEIVGPHKADLPLLERLEDQAERFGLAMKVQNVVPDRWLEDGDTVS
CCCCCHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCEEE
FGDHLFEVLHCPGHAPGHVVYFNRAQKFAHVGDVLFHGSIGRTDLPGGNHQQLLDSIRDK
HHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHH
ILPLGDEVGFICGHGPGGQVGEERRSNPFLRGL
HCCCCCCCCEEEECCCCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]