Click here to switch to the map view.

The map label for this gene is 150397421

Identifier: 150397421

GI number: 150397421

Start: 2298358

End: 2298927

Strand: Reverse

Name: 150397421

Synonym: Smed_2221

Alternate gene names: NA

Gene position: 2298927-2298358 (Counterclockwise)

Preceding gene: 150397422

Following gene: 150397420

Centisome position: 60.79

GC content: 61.58

Gene sequence:

>570_bases
ATGCGTTGCGTTTTTGTCGTCGTCCTCCTGTTGTTGGCCGGCTGCGGAACGGTGCCGAGAGAGACCCGGAACGCCTGTGC
GGTTTTCGAGCAGCGAGACAATCTTTTCAACAATTGGCGCCGGGCTGCCTATGCGGCAGAGCGTGAATATGGCGTGCCCG
TTCCGGTGCTGATGGCGACGGTCTATACGGAGTCCGGCTTCCGCCATAATGCCAAGCCGCCGCGGACGAAACTCCTCGGC
TTCATTCCGTGGACAAGGATTTCCTCGGCCTATGGATATTCGCAGGCGCTTGACGGCACCTGGGCGCGATATCAGGCAGA
AACGGGCCGATGGACGGCACGCCGGTCGGATTTCGGGGACGCGATCCGCTTTATCGCCTGGTACCACAATCAGAGCCACA
AGCGGAACGGCATTGCCCTGAACGACACGTACAGACTCTATATCGCCTATTACCACGGCCACAGCGGTTATGCCCGCGGC
AACTGGAGCGCCACGGCGAAGGCGGGCGCCAAACGGGCGTCCGGCATGGCCGCTGTCTACGCGCGCCAATTGCGCGGCTG
CAATTCGTGA

Upstream 100 bases:

>100_bases
CGTTCGCGGCATGTCCCACAGCCTGGTAATCGGCCATCGCATAAAAACCGATCCTTAACATTTACATTTTATCAATCTCT
CGCAAACGAGAGGTTCCGCG

Downstream 100 bases:

>100_bases
CCCGGGCGGATGACGCAAGCCGTTAAGCCAGCCATTAAAATGTCGCCTCCCCGTCGGAATCTGTACCCCTGGATCGTCCT
TGTATTGTCTTTCAAAGAAT

Product: putative transmembrane protein

Products: NA

Alternate protein names: Transcriptional Regulatory Protein; Lytic Transglycosylase Catalytic; Soluble Lytic Murein Transglycosylase; Glycoside Hydroylase Family; Lytic Murein Transglycosylase; Glycoside Hydrolase Family Protein; Transmembrane Protein; Transglycosylase SLT Domain; Conserved Secreted Protein; Lytic Transglycosylase; Transcriptional Regulator Protein

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MRCVFVVVLLLLAGCGTVPRETRNACAVFEQRDNLFNNWRRAAYAAEREYGVPVPVLMATVYTESGFRHNAKPPRTKLLG
FIPWTRISSAYGYSQALDGTWARYQAETGRWTARRSDFGDAIRFIAWYHNQSHKRNGIALNDTYRLYIAYYHGHSGYARG
NWSATAKAGAKRASGMAAVYARQLRGCNS

Sequences:

>Translated_189_residues
MRCVFVVVLLLLAGCGTVPRETRNACAVFEQRDNLFNNWRRAAYAAEREYGVPVPVLMATVYTESGFRHNAKPPRTKLLG
FIPWTRISSAYGYSQALDGTWARYQAETGRWTARRSDFGDAIRFIAWYHNQSHKRNGIALNDTYRLYIAYYHGHSGYARG
NWSATAKAGAKRASGMAAVYARQLRGCNS
>Mature_189_residues
MRCVFVVVLLLLAGCGTVPRETRNACAVFEQRDNLFNNWRRAAYAAEREYGVPVPVLMATVYTESGFRHNAKPPRTKLLG
FIPWTRISSAYGYSQALDGTWARYQAETGRWTARRSDFGDAIRFIAWYHNQSHKRNGIALNDTYRLYIAYYHGHSGYARG
NWSATAKAGAKRASGMAAVYARQLRGCNS

Specific function: Unknown

COG id: COG4764

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21356; Mature: 21356

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCVFVVVLLLLAGCGTVPRETRNACAVFEQRDNLFNNWRRAAYAAEREYGVPVPVLMAT
CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
VYTESGFRHNAKPPRTKLLGFIPWTRISSAYGYSQALDGTWARYQAETGRWTARRSDFGD
HHHCCCCCCCCCCCHHHEEECCCHHHHHHHCCCHHHCCCCHHHEECCCCCCCCCCCCHHH
AIRFIAWYHNQSHKRNGIALNDTYRLYIAYYHGHSGYARGNWSATAKAGAKRASGMAAVY
HHHHHHHHCCCCCCCCCEEECCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCHHHHH
ARQLRGCNS
HHHHCCCCC
>Mature Secondary Structure
MRCVFVVVLLLLAGCGTVPRETRNACAVFEQRDNLFNNWRRAAYAAEREYGVPVPVLMAT
CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
VYTESGFRHNAKPPRTKLLGFIPWTRISSAYGYSQALDGTWARYQAETGRWTARRSDFGD
HHHCCCCCCCCCCCHHHEEECCCHHHHHHHCCCHHHCCCCHHHEECCCCCCCCCCCCHHH
AIRFIAWYHNQSHKRNGIALNDTYRLYIAYYHGHSGYARGNWSATAKAGAKRASGMAAVY
HHHHHHHHCCCCCCCCCEEECCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCHHHHH
ARQLRGCNS
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA