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The map label for this gene is ydcS [H]

Identifier: 150397388

GI number: 150397388

Start: 2262860

End: 2264020

Strand: Direct

Name: ydcS [H]

Synonym: Smed_2187

Alternate gene names: 150397388

Gene position: 2262860-2264020 (Clockwise)

Preceding gene: 150397387

Following gene: 150397389

Centisome position: 59.83

GC content: 60.03

Gene sequence:

>1161_bases
ATGAAGCAGATCCTGAAATCCTGTACTGCGCTCACCCTGTCGATGGCGCTCGTCGCGCCTGCCTTTGCGCAGGAGCCGCC
GAAGGAACTGGGGCCAGGCGAAGGCGCGCTCTCGATCGTCGCCTGGGCGGGCTATATCGAGCGCGGCGAGACTGACAAGA
ATTACGATTGGGTGACCGATTTCGAGAGCAAGACGGGATGCAAGGTCAGCGTCAAGACGGCGGCAACCTCGGATGAGATG
GTCGCTCTGATGAACGAAGGCGGCTTCGACCTCGTCACCGCTTCCGGCGACGCCTCCCTCCGCCTTGTAGCCGGCAAACG
CGTCCAGCCGATAAACACCGATCTCATCCCCAGTTGGAAGACGATCGACGAGCGCATGCAGAACGCCCCATGGCACACGG
TCGACGGTGTCCACTACGGCACACCCTATGTCTGGGGGCCGAATGTTCTGATGTACAATACCGAAGCCTTCAAGGATCAG
CCGCCGAAGAGCTGGAATGTCGTTTTCGAAGAGACGACATTGCCCGACGGCAAGTCGAACAAGGGCCGCATTCAGGCTTA
TGACGGCCCCATCCATGTGGCCGACGCTGCCAACTACCTGATGGCGCACAAGCCAGACCTCGGCATCAAAGACCCCTACG
AGCTGAATGAGGACCAGTACAAGGCAGCACTCGACCTGTTGCGGACCCAACGCACACTGGTCGGCCGCTACTGGCACGAC
GCGATGATCCAGATCGACGATTTCAAGAATGAAGGCGTCGTGGCCTCCGGCTCCTGGCCCTTTCAGGTCAATCTGATGCA
GGCCGAAAAGCAGCCTGTAGCCTCGATCATTCCGGAAGAGGGAGTGACGGGCTGGGCCGATACGACGATGCTGCATTCCG
ACAGCGAACATCCGAACTGCGCCTATATGTGGATGGAGCATTCGCTTTCGCCGAAGGTCCAGGGTGACGTCTCGGCCTGG
TTCGGCGCCAACCCCTCGGTCGGCGCCGCCTGCAAAGGCAACGCCCTTCTGACCGACGAGGGTTGCAAGACCAATGGCTA
TGACGACTTCGAAAAGGTCAAGTTCTGGAAGACGCCGGTAACGAAATGCGAGAGCCAGGGCGAATGCGTGCCCTATCACC
GCTGGGTCTCCGACTATATCGGCGTCATCGGCGGGCGGTAA

Upstream 100 bases:

>100_bases
ACCGTCATTCTGATTAATGAATTTGCGAATGCGAGGAAATCAAGGCACGCTTCATTCCGGGAACAAAGCCGCAAACGGCG
TTAAACCGGGGAGACTTCCG

Downstream 100 bases:

>100_bases
GCCCTGACCCCAGCGCAAGTATTTGCCCCCGATTCCTCTCCCCACTTCGCGGGGAGAGGAATGCTACCGCGGATGCCCAA
CAGACGGGGCGAGGCCCCGG

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MKQILKSCTALTLSMALVAPAFAQEPPKELGPGEGALSIVAWAGYIERGETDKNYDWVTDFESKTGCKVSVKTAATSDEM
VALMNEGGFDLVTASGDASLRLVAGKRVQPINTDLIPSWKTIDERMQNAPWHTVDGVHYGTPYVWGPNVLMYNTEAFKDQ
PPKSWNVVFEETTLPDGKSNKGRIQAYDGPIHVADAANYLMAHKPDLGIKDPYELNEDQYKAALDLLRTQRTLVGRYWHD
AMIQIDDFKNEGVVASGSWPFQVNLMQAEKQPVASIIPEEGVTGWADTTMLHSDSEHPNCAYMWMEHSLSPKVQGDVSAW
FGANPSVGAACKGNALLTDEGCKTNGYDDFEKVKFWKTPVTKCESQGECVPYHRWVSDYIGVIGGR

Sequences:

>Translated_386_residues
MKQILKSCTALTLSMALVAPAFAQEPPKELGPGEGALSIVAWAGYIERGETDKNYDWVTDFESKTGCKVSVKTAATSDEM
VALMNEGGFDLVTASGDASLRLVAGKRVQPINTDLIPSWKTIDERMQNAPWHTVDGVHYGTPYVWGPNVLMYNTEAFKDQ
PPKSWNVVFEETTLPDGKSNKGRIQAYDGPIHVADAANYLMAHKPDLGIKDPYELNEDQYKAALDLLRTQRTLVGRYWHD
AMIQIDDFKNEGVVASGSWPFQVNLMQAEKQPVASIIPEEGVTGWADTTMLHSDSEHPNCAYMWMEHSLSPKVQGDVSAW
FGANPSVGAACKGNALLTDEGCKTNGYDDFEKVKFWKTPVTKCESQGECVPYHRWVSDYIGVIGGR
>Mature_386_residues
MKQILKSCTALTLSMALVAPAFAQEPPKELGPGEGALSIVAWAGYIERGETDKNYDWVTDFESKTGCKVSVKTAATSDEM
VALMNEGGFDLVTASGDASLRLVAGKRVQPINTDLIPSWKTIDERMQNAPWHTVDGVHYGTPYVWGPNVLMYNTEAFKDQ
PPKSWNVVFEETTLPDGKSNKGRIQAYDGPIHVADAANYLMAHKPDLGIKDPYELNEDQYKAALDLLRTQRTLVGRYWHD
AMIQIDDFKNEGVVASGSWPFQVNLMQAEKQPVASIIPEEGVTGWADTTMLHSDSEHPNCAYMWMEHSLSPKVQGDVSAW
FGANPSVGAACKGNALLTDEGCKTNGYDDFEKVKFWKTPVTKCESQGECVPYHRWVSDYIGVIGGR

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein potD/potF family [H]

Homologues:

Organism=Escherichia coli, GI1787711, Length=386, Percent_Identity=61.3989637305699, Blast_Score=507, Evalue=1e-145,
Organism=Escherichia coli, GI1787078, Length=341, Percent_Identity=27.2727272727273, Blast_Score=86, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR001188 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 42636; Mature: 42636

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQILKSCTALTLSMALVAPAFAQEPPKELGPGEGALSIVAWAGYIERGETDKNYDWVTD
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEEEEHHHHCCCCCCCCCEEEE
FESKTGCKVSVKTAATSDEMVALMNEGGFDLVTASGDASLRLVAGKRVQPINTDLIPSWK
CCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCHH
TIDERMQNAPWHTVDGVHYGTPYVWGPNVLMYNTEAFKDQPPKSWNVVFEETTLPDGKSN
HHHHHHHCCCCCEECCEECCCCEEECCCEEEECCHHHCCCCCCCCEEEEEEEECCCCCCC
KGRIQAYDGPIHVADAANYLMAHKPDLGIKDPYELNEDQYKAALDLLRTQRTLVGRYWHD
CCEEEEECCCEEEECHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
AMIQIDDFKNEGVVASGSWPFQVNLMQAEKQPVASIIPEEGVTGWADTTMLHSDSEHPNC
EEEEEECCCCCCEEECCCCCEEEEEEECCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCE
AYMWMEHSLSPKVQGDVSAWFGANPSVGAACKGNALLTDEGCKTNGYDDFEKVKFWKTPV
EEEEEECCCCCCCCCCCCEECCCCCCCCCEECCCEEEECCCCCCCCCCCHHHHEEECCCH
TKCESQGECVPYHRWVSDYIGVIGGR
HHHCCCCCEECHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKQILKSCTALTLSMALVAPAFAQEPPKELGPGEGALSIVAWAGYIERGETDKNYDWVTD
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEEEEEHHHHCCCCCCCCCEEEE
FESKTGCKVSVKTAATSDEMVALMNEGGFDLVTASGDASLRLVAGKRVQPINTDLIPSWK
CCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCHH
TIDERMQNAPWHTVDGVHYGTPYVWGPNVLMYNTEAFKDQPPKSWNVVFEETTLPDGKSN
HHHHHHHCCCCCEECCEECCCCEEECCCEEEECCHHHCCCCCCCCEEEEEEEECCCCCCC
KGRIQAYDGPIHVADAANYLMAHKPDLGIKDPYELNEDQYKAALDLLRTQRTLVGRYWHD
CCEEEEECCCEEEECHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
AMIQIDDFKNEGVVASGSWPFQVNLMQAEKQPVASIIPEEGVTGWADTTMLHSDSEHPNC
EEEEEECCCCCCEEECCCCCEEEEEEECCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCE
AYMWMEHSLSPKVQGDVSAWFGANPSVGAACKGNALLTDEGCKTNGYDDFEKVKFWKTPV
EEEEEECCCCCCCCCCCCEECCCCCCCCCEECCCEEEECCCCCCCCCCCHHHHEEECCCH
TKCESQGECVPYHRWVSDYIGVIGGR
HHHCCCCCEECHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]