| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is yxbG [H]
Identifier: 150397372
GI number: 150397372
Start: 2241752
End: 2242513
Strand: Direct
Name: yxbG [H]
Synonym: Smed_2171
Alternate gene names: 150397372
Gene position: 2241752-2242513 (Clockwise)
Preceding gene: 150397371
Following gene: 150397374
Centisome position: 59.28
GC content: 64.44
Gene sequence:
>762_bases ATGATTCTGAAAGACCGGATCGCGATCGTGACCGGAGCGGGCTCCGGGATCGGCCAGGCGGGTGCCGCCATCATGGCGCG CGAAGGCGCGCATGTGGTGGTCGTGGACCGAAGCGTGAATGCCTGCGAAGACACCGTAGCGGCAATCGCAGTCAGCGGCG GCAGCGCCGAAGCACTCGCCATCGACGTCACCGATGACGACGCGCTCGCGGACGGCATCGCCGCTGTCCTTTACCGGCAC GGCCGCATCGACATCCTGCACAACCACGCCGGCGCACAGGTCGCAGGCGATCTGGAAGGGGTCGAGGTGGCGGGCTTTGA CCGCTCCTGGAACCTCAACGTCCGCGCACATTTTATGGCCGCCCGGTTCGTCATGCCGTCGATGAGGGCAGCCGGCCGTG GCGTGATCGTCAACACGTCGTCATCATCCGGGGTGCTCTATGATCGTGAGATGATCGCCTATACGACGACGAAGCACGCG GTCATCGCCATGACCCGGCAGATGGCCGGCGATTACGCGAAGTACGGCGTCCGGGTGAACGCACTCTGCCCGGGTTGGGT CGACACGCCTTTCAACGAGCCTTTCATCGCCCAGATGGGCGGGCGCGGCGCAATCGAGGCCTATATCCGCCAGAAGGTGC CGCTCGGCCGCTGGGCCAGCGTCGATGAGATCGCCGAATCGATCCTCTTCCTTGTTTCCGACCGTTCTTCCTACATGACC GGGCAGATCCTCGTGGTGGACGGTGGCGAGACGATCGTTTGA
Upstream 100 bases:
>100_bases AATGCGATCGCGACTCTGGTTCTGGTCGCGTCGCTGCTTCTGATCCTGACCGCCCGCGTGCTCATGCGCGAAAAGAAAAG CAAATCCGGGGAGTAAAACA
Downstream 100 bases:
>100_bases CACGAGCCCTGCCTCGCGCCCGCGCACTGAATCACTTCTCGACGGAACGGCGGCAGGTCTTTGATTCGATTCGTGAAACC ATTCTTTCTGAACTGCAGCC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 253
Protein sequence:
>253_residues MILKDRIAIVTGAGSGIGQAGAAIMAREGAHVVVVDRSVNACEDTVAAIAVSGGSAEALAIDVTDDDALADGIAAVLYRH GRIDILHNHAGAQVAGDLEGVEVAGFDRSWNLNVRAHFMAARFVMPSMRAAGRGVIVNTSSSSGVLYDREMIAYTTTKHA VIAMTRQMAGDYAKYGVRVNALCPGWVDTPFNEPFIAQMGGRGAIEAYIRQKVPLGRWASVDEIAESILFLVSDRSSYMT GQILVVDGGETIV
Sequences:
>Translated_253_residues MILKDRIAIVTGAGSGIGQAGAAIMAREGAHVVVVDRSVNACEDTVAAIAVSGGSAEALAIDVTDDDALADGIAAVLYRH GRIDILHNHAGAQVAGDLEGVEVAGFDRSWNLNVRAHFMAARFVMPSMRAAGRGVIVNTSSSSGVLYDREMIAYTTTKHA VIAMTRQMAGDYAKYGVRVNALCPGWVDTPFNEPFIAQMGGRGAIEAYIRQKVPLGRWASVDEIAESILFLVSDRSSYMT GQILVVDGGETIV >Mature_253_residues MILKDRIAIVTGAGSGIGQAGAAIMAREGAHVVVVDRSVNACEDTVAAIAVSGGSAEALAIDVTDDDALADGIAAVLYRH GRIDILHNHAGAQVAGDLEGVEVAGFDRSWNLNVRAHFMAARFVMPSMRAAGRGVIVNTSSSSGVLYDREMIAYTTTKHA VIAMTRQMAGDYAKYGVRVNALCPGWVDTPFNEPFIAQMGGRGAIEAYIRQKVPLGRWASVDEIAESILFLVSDRSSYMT GQILVVDGGETIV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI66933014, Length=251, Percent_Identity=35.0597609561753, Blast_Score=115, Evalue=6e-26, Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=32.2834645669291, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI40254992, Length=249, Percent_Identity=28.1124497991968, Blast_Score=105, Evalue=5e-23, Organism=Homo sapiens, GI7705925, Length=255, Percent_Identity=30.5882352941176, Blast_Score=101, Evalue=7e-22, Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=29.4354838709677, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI59889578, Length=225, Percent_Identity=31.5555555555556, Blast_Score=96, Evalue=2e-20, Organism=Homo sapiens, GI5031737, Length=251, Percent_Identity=27.8884462151394, Blast_Score=88, Evalue=6e-18, Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=27.5193798449612, Blast_Score=88, Evalue=9e-18, Organism=Homo sapiens, GI142976729, Length=189, Percent_Identity=26.984126984127, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI31542939, Length=197, Percent_Identity=30.4568527918782, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=23.9382239382239, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI210032110, Length=190, Percent_Identity=26.3157894736842, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=26.5873015873016, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=29.0155440414508, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI4758504, Length=271, Percent_Identity=25.0922509225092, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI109715829, Length=196, Percent_Identity=31.1224489795918, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI4503301, Length=256, Percent_Identity=23.046875, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI20149619, Length=206, Percent_Identity=26.6990291262136, Blast_Score=71, Evalue=7e-13, Organism=Homo sapiens, GI7706318, Length=200, Percent_Identity=29, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI4503817, Length=187, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI40254986, Length=246, Percent_Identity=25.2032520325203, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI126723191, Length=196, Percent_Identity=29.0816326530612, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI224922801, Length=175, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=1e-10, Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=34.5098039215686, Blast_Score=131, Evalue=4e-32, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=34.0080971659919, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI87082160, Length=253, Percent_Identity=30.4347826086957, Blast_Score=101, Evalue=4e-23, Organism=Escherichia coli, GI1787335, Length=260, Percent_Identity=29.6153846153846, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=28.4552845528455, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=31.3492063492063, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI1789057, Length=260, Percent_Identity=28.4615384615385, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI2367175, Length=250, Percent_Identity=28.4, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1789378, Length=259, Percent_Identity=30.5019305019305, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=26.1224489795918, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1786812, Length=248, Percent_Identity=30.241935483871, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=25.9109311740891, Blast_Score=67, Evalue=8e-13, Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=34.6456692913386, Blast_Score=127, Evalue=4e-30, Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=35.1145038167939, Blast_Score=124, Evalue=4e-29, Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=34.4569288389513, Blast_Score=124, Evalue=5e-29, Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=35.1778656126482, Blast_Score=124, Evalue=6e-29, Organism=Caenorhabditis elegans, GI17559104, Length=271, Percent_Identity=33.210332103321, Blast_Score=123, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17562910, Length=271, Percent_Identity=34.3173431734317, Blast_Score=121, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17562904, Length=267, Percent_Identity=32.9588014981273, Blast_Score=118, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=30.9236947791165, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=33.7349397590361, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI25147288, Length=250, Percent_Identity=34.8, Blast_Score=111, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17560150, Length=269, Percent_Identity=34.5724907063197, Blast_Score=110, Evalue=7e-25, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=33.587786259542, Blast_Score=110, Evalue=7e-25, Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=33.3333333333333, Blast_Score=110, Evalue=9e-25, Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=32.4427480916031, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=32.824427480916, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI17560332, Length=273, Percent_Identity=31.5018315018315, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17561402, Length=247, Percent_Identity=30.7692307692308, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17538486, Length=271, Percent_Identity=30.6273062730627, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=32.0754716981132, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17538480, Length=270, Percent_Identity=30.7407407407407, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17551412, Length=274, Percent_Identity=31.3868613138686, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI72000259, Length=259, Percent_Identity=30.5019305019305, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17565030, Length=269, Percent_Identity=30.8550185873606, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=27.906976744186, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17563726, Length=256, Percent_Identity=29.296875, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17536651, Length=263, Percent_Identity=26.615969581749, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI115534694, Length=253, Percent_Identity=28.0632411067194, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17508895, Length=190, Percent_Identity=27.3684210526316, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17538182, Length=258, Percent_Identity=27.5193798449612, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17564282, Length=187, Percent_Identity=28.3422459893048, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI71982365, Length=189, Percent_Identity=26.4550264550265, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17561272, Length=256, Percent_Identity=28.90625, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17568967, Length=192, Percent_Identity=32.2916666666667, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17508651, Length=255, Percent_Identity=26.2745098039216, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193203115, Length=189, Percent_Identity=24.3386243386243, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193203117, Length=186, Percent_Identity=24.7311827956989, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17555612, Length=266, Percent_Identity=28.1954887218045, Blast_Score=66, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=255, Percent_Identity=23.5294117647059, Blast_Score=77, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6322861, Length=191, Percent_Identity=27.7486910994764, Blast_Score=76, Evalue=5e-15, Organism=Drosophila melanogaster, GI21357041, Length=256, Percent_Identity=36.71875, Blast_Score=142, Evalue=2e-34, Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=35.7142857142857, Blast_Score=134, Evalue=6e-32, Organism=Drosophila melanogaster, GI28571526, Length=256, Percent_Identity=35.546875, Blast_Score=132, Evalue=2e-31, Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=33.8645418326693, Blast_Score=128, Evalue=4e-30, Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=31.6205533596838, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI24644339, Length=258, Percent_Identity=31.7829457364341, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI24643142, Length=250, Percent_Identity=28.4, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI24649181, Length=188, Percent_Identity=30.3191489361702, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI24644337, Length=174, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=7e-18, Organism=Drosophila melanogaster, GI17737361, Length=265, Percent_Identity=24.9056603773585, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI21357673, Length=255, Percent_Identity=25.0980392156863, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI21356301, Length=194, Percent_Identity=30.4123711340206, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI18859837, Length=195, Percent_Identity=31.2820512820513, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI28573296, Length=214, Percent_Identity=29.9065420560748, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI21358495, Length=231, Percent_Identity=24.6753246753247, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24640492, Length=188, Percent_Identity=26.063829787234, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI22024069, Length=199, Percent_Identity=28.643216080402, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24581726, Length=194, Percent_Identity=26.2886597938144, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24640442, Length=189, Percent_Identity=27.5132275132275, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24641232, Length=262, Percent_Identity=24.8091603053435, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26711; Mature: 26711
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILKDRIAIVTGAGSGIGQAGAAIMAREGAHVVVVDRSVNACEDTVAAIAVSGGSAEALA CEECCEEEEEEECCCCCCCCCCEEEEECCCEEEEEECCCCCHHHCEEEEEECCCCCEEEE IDVTDDDALADGIAAVLYRHGRIDILHNHAGAQVAGDLEGVEVAGFDRSWNLNVRAHFMA EEECCCHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCEEEECCCCCCCCEEEEEEEE ARFVMPSMRAAGRGVIVNTSSSSGVLYDREMIAYTTTKHAVIAMTRQMAGDYAKYGVRVN HHHHHHCHHHCCCEEEEECCCCCCEEEECEEEEEECCCCEEEHHHHHHCCCHHHHCEEEE ALCPGWVDTPFNEPFIAQMGGRGAIEAYIRQKVPLGRWASVDEIAESILFLVSDRSSYMT EECCCCCCCCCCCCHHEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHEEEEECCCCCEE GQILVVDGGETIV EEEEEECCCCCCC >Mature Secondary Structure MILKDRIAIVTGAGSGIGQAGAAIMAREGAHVVVVDRSVNACEDTVAAIAVSGGSAEALA CEECCEEEEEEECCCCCCCCCCEEEEECCCEEEEEECCCCCHHHCEEEEEECCCCCEEEE IDVTDDDALADGIAAVLYRHGRIDILHNHAGAQVAGDLEGVEVAGFDRSWNLNVRAHFMA EEECCCHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCEEEECCCCCCCCEEEEEEEE ARFVMPSMRAAGRGVIVNTSSSSGVLYDREMIAYTTTKHAVIAMTRQMAGDYAKYGVRVN HHHHHHCHHHCCCEEEEECCCCCCEEEECEEEEEECCCCEEEHHHHHHCCCHHHHCEEEE ALCPGWVDTPFNEPFIAQMGGRGAIEAYIRQKVPLGRWASVDEIAESILFLVSDRSSYMT EECCCCCCCCCCCCHHEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHEEEEECCCCCEE GQILVVDGGETIV EEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7584049; 9384377 [H]