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The map label for this gene is yfiO [C]

Identifier: 150397273

GI number: 150397273

Start: 2126104

End: 2126970

Strand: Reverse

Name: yfiO [C]

Synonym: Smed_2072

Alternate gene names: 150397273

Gene position: 2126970-2126104 (Counterclockwise)

Preceding gene: 150397274

Following gene: 150397272

Centisome position: 56.24

GC content: 58.59

Gene sequence:

>867_bases
ATGGTTCTTGCAGTTTCTGTCGACATAAGAAAATCAGCGCGTGTCGCCGCGGTCGTTTTAGCGGCTGTCGCCGGCTCCAG
TCTGATCACGGCCTGCCAGAATGATCCGGACATCGACATCACCAAACTCACGGCGGAGACCGACCCGCCGGAGGTGCTCT
ACAATCAGGGTCTCGCAAACCTGAACGCCGGCAAGACCACGGAGGCGGCGCGGAAGTTCGAGGCGATCGACAAGCAGCAC
CCGTTCTCCGAATATGCCCGCAAAGCGCTGGTGATGAATGCCTTCGTTTCTTACCGTAACGGCCAGTATCAGGACGCGAT
CAACTCGACCAACCGCTACCTGAATCTTTATCCGCAGTCCGAAGACGCGGCCTATGCACAATATATTCAGGGGCTGGCCT
ACACCAAGCAGATCCCGTCGGTGACGCAGGATCAAAGACCGGCTATGAGGGCAATGGAGGCAATGCAGGTCGTCGTCGAC
AAATATCCGGATTCCGAATATGTCGACGACGCGCAGGCCAAGATCCGTTTTGCACGCGACCAGCTCGCCGGCAAGGAAAT
GCAGGTCGGCCGTTATTATCTCGAGCGCAAGGAATACCTGGCCGCGATTTCGCGCTTCCGCACCGTCGTCGAGCGATATC
CGACCACAAATCAGGTCGAGGAAGCACTCGCCCGTCTCGTCGAAGCCTATTATGCGATGGGCGTGACCGGGGAAGCTCAG
ACAGCGGCAGCGGTTCTCGGGCATAACTACCCGGACAGTCAATGGTATGCCGATTCCTACAAGCTGCTGCAATCGGGCGG
GCTAGAGCCGCGCGAAACCGGCACATCCTGGATCGCGCGCGCGGGCAAAAACCTTATCGGCGCGTGA

Upstream 100 bases:

>100_bases
GCATGAATTGCCGATCATGACGTTGCGGTCTTGAGGTAACTTGCTCTAAAACGCGCAAGTCTGGCGGGGTGCTAGCCGCT
GAGTGAAACGGGAATATCCG

Downstream 100 bases:

>100_bases
TTTCCAGGCGCCCGACAACGAAGATATGAAACCGGATGCTCGCCCAGCTCGCGATCCGAGATATCGTCCTGATCGAACGG
CTTGACCTCAGCTTCGATGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MVLAVSVDIRKSARVAAVVLAAVAGSSLITACQNDPDIDITKLTAETDPPEVLYNQGLANLNAGKTTEAARKFEAIDKQH
PFSEYARKALVMNAFVSYRNGQYQDAINSTNRYLNLYPQSEDAAYAQYIQGLAYTKQIPSVTQDQRPAMRAMEAMQVVVD
KYPDSEYVDDAQAKIRFARDQLAGKEMQVGRYYLERKEYLAAISRFRTVVERYPTTNQVEEALARLVEAYYAMGVTGEAQ
TAAAVLGHNYPDSQWYADSYKLLQSGGLEPRETGTSWIARAGKNLIGA

Sequences:

>Translated_288_residues
MVLAVSVDIRKSARVAAVVLAAVAGSSLITACQNDPDIDITKLTAETDPPEVLYNQGLANLNAGKTTEAARKFEAIDKQH
PFSEYARKALVMNAFVSYRNGQYQDAINSTNRYLNLYPQSEDAAYAQYIQGLAYTKQIPSVTQDQRPAMRAMEAMQVVVD
KYPDSEYVDDAQAKIRFARDQLAGKEMQVGRYYLERKEYLAAISRFRTVVERYPTTNQVEEALARLVEAYYAMGVTGEAQ
TAAAVLGHNYPDSQWYADSYKLLQSGGLEPRETGTSWIARAGKNLIGA
>Mature_288_residues
MVLAVSVDIRKSARVAAVVLAAVAGSSLITACQNDPDIDITKLTAETDPPEVLYNQGLANLNAGKTTEAARKFEAIDKQH
PFSEYARKALVMNAFVSYRNGQYQDAINSTNRYLNLYPQSEDAAYAQYIQGLAYTKQIPSVTQDQRPAMRAMEAMQVVVD
KYPDSEYVDDAQAKIRFARDQLAGKEMQVGRYYLERKEYLAAISRFRTVVERYPTTNQVEEALARLVEAYYAMGVTGEAQ
TAAAVLGHNYPDSQWYADSYKLLQSGGLEPRETGTSWIARAGKNLIGA

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=241, Percent_Identity=25.7261410788382, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31952; Mature: 31952

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLAVSVDIRKSARVAAVVLAAVAGSSLITACQNDPDIDITKLTAETDPPEVLYNQGLAN
CEEEEEECHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEEECCCCCHHHHHHCCCCC
LNAGKTTEAARKFEAIDKQHPFSEYARKALVMNAFVSYRNGQYQDAINSTNRYLNLYPQS
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEECCCC
EDAAYAQYIQGLAYTKQIPSVTQDQRPAMRAMEAMQVVVDKYPDSEYVDDAQAKIRFARD
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHH
QLAGKEMQVGRYYLERKEYLAAISRFRTVVERYPTTNQVEEALARLVEAYYAMGVTGEAQ
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHH
TAAAVLGHNYPDSQWYADSYKLLQSGGLEPRETGTSWIARAGKNLIGA
HHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHCCC
>Mature Secondary Structure
MVLAVSVDIRKSARVAAVVLAAVAGSSLITACQNDPDIDITKLTAETDPPEVLYNQGLAN
CEEEEEECHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEEECCCCCHHHHHHCCCCC
LNAGKTTEAARKFEAIDKQHPFSEYARKALVMNAFVSYRNGQYQDAINSTNRYLNLYPQS
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEECCCC
EDAAYAQYIQGLAYTKQIPSVTQDQRPAMRAMEAMQVVVDKYPDSEYVDDAQAKIRFARD
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHH
QLAGKEMQVGRYYLERKEYLAAISRFRTVVERYPTTNQVEEALARLVEAYYAMGVTGEAQ
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHH
TAAAVLGHNYPDSQWYADSYKLLQSGGLEPRETGTSWIARAGKNLIGA
HHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]