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The map label for this gene is ycjW [C]

Identifier: 150397240

GI number: 150397240

Start: 2091126

End: 2092163

Strand: Direct

Name: ycjW [C]

Synonym: Smed_2039

Alternate gene names: 150397240

Gene position: 2091126-2092163 (Clockwise)

Preceding gene: 150397238

Following gene: 150397241

Centisome position: 55.29

GC content: 64.84

Gene sequence:

>1038_bases
ATGACAGGAAAATGCCACGTGGTGAAATCGCGGCCGAAAGTGGATGAAATTGCCCGCATGGCCGGCGTGTCGAAGGCGAC
CGTCGACCGGGTGCTCAACAATCGGCCGGGGGTGCAGGAGCATACGCGCGCTCACGTGATGGCCATCGCTGCAAGCCTCG
CCGAAACGCCGGGAGAAGTCTCGAACCCCGGTAAAATCGGCCTGGACTTCATCCTCGCGGGCGGCACGAACCCCTTTATC
GCGGATCTGGCGCTCCACCTGGAGCGGCAGGCCGCGGTGCGACCGGATGTAGACGTCATCATCCATCGGCTGAACGGCAT
CGAGCCCGAGGAAATTGCCGAGAAACTGACAAGCCTTCGCCCCTCCTGCAAGGGCGTCGGCCTGATCGGGCTCGACAGCC
CGGCGGTCCGGGAGGCGTTGCGGCAGCGGATCGCGGCGGGCGTCCCGGTGCTCACCCTTGTCTCCGACATCAGTCACGTC
GGGCGGGTGAGCTATGTCGGCATTGACAACCGGGCCGCGGGGCGGCTGGCCGGATACCTGATCGGGCGCTTCGTGCCGGG
CGCGAGGGGAAAGATCGCGCTGATTGCCGGTGCCCTTGCCTATCGCGGCCATGAAGAACGCGAAATGGGTTTCCGGCACG
TGCTCGACGAGCGGTTCCCTCTTCTGGAGATCATCGCCGTTCGTGAGGTCAAGGAGAACCCCGAGCGCGCTTACAGCGAA
GTGCGCACGCTGCTCGCCGAGGAGCCCGAACTCGTCGCGATCTACTGCATCGGCGCCGGCCATGCAGGCATTGCTCGCGC
CTTGAAGGAGGCCGGGCGGGAGAAGTCCCTGATCTTCGTAGGGCACGACCTCACCGACGATACCCGTCAGTATCTGCTGA
GCGGCGTCATGGACGCGGTGATCGATCAGAACGCCGGGGTCGAAGCGCGCGAAGCCATCGACCGTCTCGTGCGCGCCACC
CGCAACGAGACCTCGATCTCTGCGGCGACGATCCGCATTCAATCGGTTTTCAGCGAAAACATCCCAGCCGACGCCTGA

Upstream 100 bases:

>100_bases
ATCGAACATTCAGGCCAAACGGCGGATAAAACACTCAATTTGAGGTAAAACCATTGACCGCCGTATTCTCCGCATCTAGA
TTCCCTCCGATATCAAGGGA

Downstream 100 bases:

>100_bases
ATCGCCGCAAACGGAGCAAAACATGGATAGGTTTGTCACGGAAGGCATTACGGTTCTGTTCGATCCGGTATGCGGCGTCG
TCGACGAGGTCGTTATCGCC

Product: regulatory protein LacI

Products: NA

Alternate protein names: LacI Family Transcription Regulator; Regulatory Protein LacI; LacI Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator Protein LacI Family; Transcriptional Regulator LacI Family Protein; Regulatory Protein LacI Family; LacI Regulatory Protein; LacI Family Regulatory Protein; Transcription Regulator Protein; HTH-Type Transcriptional Repressor PurR; Ribose ABC Transporter; HTH-Type Transcriptional Regulator MalR; Transcriptional Regulator Protein Laci-Family; ABC-Type Sugar Transport System Periplasmic Component; Sugar ABC Transporter Periplasmic Protein; Regulatory Protein; Laci-Related Transcriptional Regulator Protein; LacI Family Regulatory; HTH-Type Transcriptional Repressor Purr; Laci-Family Transcription Regulator; Transcriptional Regulatory Protein LacI Family; Transcription Regulator; Sugar ABC Transporter

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MTGKCHVVKSRPKVDEIARMAGVSKATVDRVLNNRPGVQEHTRAHVMAIAASLAETPGEVSNPGKIGLDFILAGGTNPFI
ADLALHLERQAAVRPDVDVIIHRLNGIEPEEIAEKLTSLRPSCKGVGLIGLDSPAVREALRQRIAAGVPVLTLVSDISHV
GRVSYVGIDNRAAGRLAGYLIGRFVPGARGKIALIAGALAYRGHEEREMGFRHVLDERFPLLEIIAVREVKENPERAYSE
VRTLLAEEPELVAIYCIGAGHAGIARALKEAGREKSLIFVGHDLTDDTRQYLLSGVMDAVIDQNAGVEAREAIDRLVRAT
RNETSISAATIRIQSVFSENIPADA

Sequences:

>Translated_345_residues
MTGKCHVVKSRPKVDEIARMAGVSKATVDRVLNNRPGVQEHTRAHVMAIAASLAETPGEVSNPGKIGLDFILAGGTNPFI
ADLALHLERQAAVRPDVDVIIHRLNGIEPEEIAEKLTSLRPSCKGVGLIGLDSPAVREALRQRIAAGVPVLTLVSDISHV
GRVSYVGIDNRAAGRLAGYLIGRFVPGARGKIALIAGALAYRGHEEREMGFRHVLDERFPLLEIIAVREVKENPERAYSE
VRTLLAEEPELVAIYCIGAGHAGIARALKEAGREKSLIFVGHDLTDDTRQYLLSGVMDAVIDQNAGVEAREAIDRLVRAT
RNETSISAATIRIQSVFSENIPADA
>Mature_344_residues
TGKCHVVKSRPKVDEIARMAGVSKATVDRVLNNRPGVQEHTRAHVMAIAASLAETPGEVSNPGKIGLDFILAGGTNPFIA
DLALHLERQAAVRPDVDVIIHRLNGIEPEEIAEKLTSLRPSCKGVGLIGLDSPAVREALRQRIAAGVPVLTLVSDISHVG
RVSYVGIDNRAAGRLAGYLIGRFVPGARGKIALIAGALAYRGHEEREMGFRHVLDERFPLLEIIAVREVKENPERAYSEV
RTLLAEEPELVAIYCIGAGHAGIARALKEAGREKSLIFVGHDLTDDTRQYLLSGVMDAVIDQNAGVEAREAIDRLVRATR
NETSISAATIRIQSVFSENIPADA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37193; Mature: 37062

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGKCHVVKSRPKVDEIARMAGVSKATVDRVLNNRPGVQEHTRAHVMAIAASLAETPGEV
CCCCEEEECCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC
SNPGKIGLDFILAGGTNPFIADLALHLERQAAVRPDVDVIIHRLNGIEPEEIAEKLTSLR
CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCC
PSCKGVGLIGLDSPAVREALRQRIAAGVPVLTLVSDISHVGRVSYVGIDNRAAGRLAGYL
CCCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHH
IGRFVPGARGKIALIAGALAYRGHEEREMGFRHVLDERFPLLEIIAVREVKENPERAYSE
HHHCCCCCCCCCHHEEHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHH
VRTLLAEEPELVAIYCIGAGHAGIARALKEAGREKSLIFVGHDLTDDTRQYLLSGVMDAV
HHHHHHCCCCEEEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHH
IDQNAGVEAREAIDRLVRATRNETSISAATIRIQSVFSENIPADA
HCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TGKCHVVKSRPKVDEIARMAGVSKATVDRVLNNRPGVQEHTRAHVMAIAASLAETPGEV
CCCEEEECCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC
SNPGKIGLDFILAGGTNPFIADLALHLERQAAVRPDVDVIIHRLNGIEPEEIAEKLTSLR
CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCC
PSCKGVGLIGLDSPAVREALRQRIAAGVPVLTLVSDISHVGRVSYVGIDNRAAGRLAGYL
CCCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHH
IGRFVPGARGKIALIAGALAYRGHEEREMGFRHVLDERFPLLEIIAVREVKENPERAYSE
HHHCCCCCCCCCHHEEHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHH
VRTLLAEEPELVAIYCIGAGHAGIARALKEAGREKSLIFVGHDLTDDTRQYLLSGVMDAV
HHHHHHCCCCEEEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHH
IDQNAGVEAREAIDRLVRATRNETSISAATIRIQSVFSENIPADA
HCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA