| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150397210
Identifier: 150397210
GI number: 150397210
Start: 2059571
End: 2061559
Strand: Direct
Name: 150397210
Synonym: Smed_2009
Alternate gene names: NA
Gene position: 2059571-2061559 (Clockwise)
Preceding gene: 150397207
Following gene: 150397211
Centisome position: 54.46
GC content: 61.79
Gene sequence:
>1989_bases ATGTTCGGTGCACAGCCTGCTGCTGATGTGGCGTTTTTCGCCCGAGGTGCTGCTTTGCTCGAGAGTGGATATCAATTGGC GCCTCGCGCCGGCGAGATGGATCGCCGCGATGGCTTGAAGCCCGGGAATCGCTTTCTCGGCCGTGTCGTCGGCTGCAACG GTTCGCGCGCGACGATCGCAGCCGTTGCCGAAAACGGCGAGACATCGCTTACCGAGCTCTGGTCGGTCGGCAAACTGGTC TCGATTTCCGTCGGCTCCAACCGCGTCGTGGCCCTGGTCTACTCGATGCAGACCATTTCCGAGGGTTGGGGCGAAGAGGC CAGTAACACTTTCCGCATCGAAGTGGAATTGATGGGCGAGGTTCAGGTCGGTCCGGATGGACGGGAAGCGTTTTCCGCCG GCATCAGCCGCTACCCCTATCTCGGAGCTATTGCCCATCGGATCCGCGTCAGTGACCTCGCGCGCATCTACGATCCTGGT CAATCGGACAGCTGCGTCATCGGCAAGCTCACGCAGGACGAAAGTCTCGACGCCACCATCCATGTTCCCTCGATGCTCGC CAAACACTTCGCGATCGTCGGCACCACAGGCGTCGGCAAGTCGACGGCCGTAACGCTGCTCCTCAACAAGGCAATCGCCG CGGACCCGAAGCTGCGCGTGCTGATTCTTGACCCGCACAACGAGTTCGCTGCTGCTTTTCCGGACCAGGCCGTGGTCATC GACACGGATACGCTCGACCTGCCCTTCTGGTTCTTCCGGCTGGAGGAGCTAGCCGAGGTCATCTTCCGTGGACGCCCGCC GGTGCCGGACGAACTCGACATCCTGCGTGATGTCATCGCGGATGCGAAAAGGGCGTTCAAGGGCACCGAATCCGGCCTGA TGCGGCGGCATACGGAAAGAAGCTCGATCACGGCAGACACCCCTGTCCCCTATCGCATCGCCGATCTCCTGGCGATGATC GATGAGCGCATCGGGCGGCTCGAGGGGCGCAACGACAAGCCGCATCTGCGCTCCCTTAAGAACAGGATCGTCTCCGCCGT CAACGATCCGCGATACCATTTCATGTTCTCGCAGAACACGATCACGGACACGATCGAAGACACGATTGCGAGAATCTTCC GCATCCCCGGCGACGACAGACCGATTGCCACCTTCGAGCTCGCCGGCATCCCCTCGGAGGTGGTCAATTCCCTTGCCTCC GTGCTCTGCCGAATGGCCTTCGAGATCGGCCTCTGGGGCAACGGCGCTATCCACATGCTGGTCGTTTGTGAAGAGGCGCA CCGCTATGTGCCGGCCGATCCCACGCTCGGTTTCCTGCCTACGCGCCAGGCCATTGCACGCATCGCCAAGGAAGGACGAA AATACGGAGTCTCGCTCGGCATCATTACCCAGCGACCGGGCGAACTCGATCCGACGATCCTGTCGCAATGCTCGACGGTT TTCGCCATGCGGCTCGCCAATGATCGCGACCAGGAAATCATCCGTTCGGCGATCTCCAATTCGTCGATCTCGACCACCAG CTTCATTTCCTCTATCGGCAACGGCGAGGCGATCGCCTTCGGCGAAGCAGTCGCAGTACCGATGCGCATGCGTTTTGCGC GGGTCGAAGACGCCCGCCTTCCCCGCGCCCACGGGATAACCGACAAGGTCGACGACGACGCGCCGCCCCTTGCCGACCTC CGCTCGATCATCAGCCGAATGCGCGCCGTAAACGGACCTGACATATCGAGTTTCCAACAGAGCTACCTGGCCGCGCAGAC GAAGCAGCCGCCTGTGCACGAGGAAAACGGCTTGCGGGGCAATCCGGAGATCGAACGCTTCGACCGGATTCGCGCGCAGA TCCTTTCGGGCGATGCGGACAGGGCGTCCGATCGATCCGCAACGGCCGTAAAACAGCAGGCGGGTTTCGGCCCACCCTCC TCATTGCGCGAAGGATCGCTGCGCGACAGTCTCCTCAAGCGGCCACTCGGCAGTCTCATTCGCAAGTAA
Upstream 100 bases:
>100_bases CCGTCAACGTCTTTGGTGCATCCTGCCCGCCACGACCTGCGCGCAACCAGTTATTAAACCGCAGCCGCTATCCTGGGACG CCGCATGGAAAGAGGCACCG
Downstream 100 bases:
>100_bases AGCAAATCGCGCGAGATTGCGCGGTGCTCTGCATTTGGATCCGGAAGCTCGTCTCGCGCGTTGAAGTCGATCCGACCCTA AATCTTCGTGATCTCATCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 662; Mature: 662
Protein sequence:
>662_residues MFGAQPAADVAFFARGAALLESGYQLAPRAGEMDRRDGLKPGNRFLGRVVGCNGSRATIAAVAENGETSLTELWSVGKLV SISVGSNRVVALVYSMQTISEGWGEEASNTFRIEVELMGEVQVGPDGREAFSAGISRYPYLGAIAHRIRVSDLARIYDPG QSDSCVIGKLTQDESLDATIHVPSMLAKHFAIVGTTGVGKSTAVTLLLNKAIAADPKLRVLILDPHNEFAAAFPDQAVVI DTDTLDLPFWFFRLEELAEVIFRGRPPVPDELDILRDVIADAKRAFKGTESGLMRRHTERSSITADTPVPYRIADLLAMI DERIGRLEGRNDKPHLRSLKNRIVSAVNDPRYHFMFSQNTITDTIEDTIARIFRIPGDDRPIATFELAGIPSEVVNSLAS VLCRMAFEIGLWGNGAIHMLVVCEEAHRYVPADPTLGFLPTRQAIARIAKEGRKYGVSLGIITQRPGELDPTILSQCSTV FAMRLANDRDQEIIRSAISNSSISTTSFISSIGNGEAIAFGEAVAVPMRMRFARVEDARLPRAHGITDKVDDDAPPLADL RSIISRMRAVNGPDISSFQQSYLAAQTKQPPVHEENGLRGNPEIERFDRIRAQILSGDADRASDRSATAVKQQAGFGPPS SLREGSLRDSLLKRPLGSLIRK
Sequences:
>Translated_662_residues MFGAQPAADVAFFARGAALLESGYQLAPRAGEMDRRDGLKPGNRFLGRVVGCNGSRATIAAVAENGETSLTELWSVGKLV SISVGSNRVVALVYSMQTISEGWGEEASNTFRIEVELMGEVQVGPDGREAFSAGISRYPYLGAIAHRIRVSDLARIYDPG QSDSCVIGKLTQDESLDATIHVPSMLAKHFAIVGTTGVGKSTAVTLLLNKAIAADPKLRVLILDPHNEFAAAFPDQAVVI DTDTLDLPFWFFRLEELAEVIFRGRPPVPDELDILRDVIADAKRAFKGTESGLMRRHTERSSITADTPVPYRIADLLAMI DERIGRLEGRNDKPHLRSLKNRIVSAVNDPRYHFMFSQNTITDTIEDTIARIFRIPGDDRPIATFELAGIPSEVVNSLAS VLCRMAFEIGLWGNGAIHMLVVCEEAHRYVPADPTLGFLPTRQAIARIAKEGRKYGVSLGIITQRPGELDPTILSQCSTV FAMRLANDRDQEIIRSAISNSSISTTSFISSIGNGEAIAFGEAVAVPMRMRFARVEDARLPRAHGITDKVDDDAPPLADL RSIISRMRAVNGPDISSFQQSYLAAQTKQPPVHEENGLRGNPEIERFDRIRAQILSGDADRASDRSATAVKQQAGFGPPS SLREGSLRDSLLKRPLGSLIRK >Mature_662_residues MFGAQPAADVAFFARGAALLESGYQLAPRAGEMDRRDGLKPGNRFLGRVVGCNGSRATIAAVAENGETSLTELWSVGKLV SISVGSNRVVALVYSMQTISEGWGEEASNTFRIEVELMGEVQVGPDGREAFSAGISRYPYLGAIAHRIRVSDLARIYDPG QSDSCVIGKLTQDESLDATIHVPSMLAKHFAIVGTTGVGKSTAVTLLLNKAIAADPKLRVLILDPHNEFAAAFPDQAVVI DTDTLDLPFWFFRLEELAEVIFRGRPPVPDELDILRDVIADAKRAFKGTESGLMRRHTERSSITADTPVPYRIADLLAMI DERIGRLEGRNDKPHLRSLKNRIVSAVNDPRYHFMFSQNTITDTIEDTIARIFRIPGDDRPIATFELAGIPSEVVNSLAS VLCRMAFEIGLWGNGAIHMLVVCEEAHRYVPADPTLGFLPTRQAIARIAKEGRKYGVSLGIITQRPGELDPTILSQCSTV FAMRLANDRDQEIIRSAISNSSISTTSFISSIGNGEAIAFGEAVAVPMRMRFARVEDARLPRAHGITDKVDDDAPPLADL RSIISRMRAVNGPDISSFQQSYLAAQTKQPPVHEENGLRGNPEIERFDRIRAQILSGDADRASDRSATAVKQQAGFGPPS SLREGSLRDSLLKRPLGSLIRK
Specific function: Unknown
COG id: COG0433
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJECL08 and MJ1429 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008571 - InterPro: IPR002789 - InterPro: IPR018538 [H]
Pfam domain/function: PF05872 DUF853; PF01935 DUF87; PF09378 HAS-barrel [H]
EC number: NA
Molecular weight: Translated: 72207; Mature: 72207
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFGAQPAADVAFFARGAALLESGYQLAPRAGEMDRRDGLKPGNRFLGRVVGCNGSRATIA CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHEECCCCCCEEEE AVAENGETSLTELWSVGKLVSISVGSNRVVALVYSMQTISEGWGEEASNTFRIEVELMGE EEECCCCHHHHHHHHCCCEEEEEECCCEEEEEEEHHHHHHHCCCCCCCCEEEEEEEEEEE VQVGPDGREAFSAGISRYPYLGAIAHRIRVSDLARIYDPGQSDSCVIGKLTQDESLDATI EEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEE HVPSMLAKHFAIVGTTGVGKSTAVTLLLNKAIAADPKLRVLILDPHNEFAAAFPDQAVVI EHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCCCEEEE DTDTLDLPFWFFRLEELAEVIFRGRPPVPDELDILRDVIADAKRAFKGTESGLMRRHTER ECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH SSITADTPVPYRIADLLAMIDERIGRLEGRNDKPHLRSLKNRIVSAVNDPRYHFMFSQNT CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC ITDTIEDTIARIFRIPGDDRPIATFELAGIPSEVVNSLASVLCRMAFEIGLWGNGAIHML HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEE VVCEEAHRYVPADPTLGFLPTRQAIARIAKEGRKYGVSLGIITQRPGELDPTILSQCSTV EEEEHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHH FAMRLANDRDQEIIRSAISNSSISTTSFISSIGNGEAIAFGEAVAVPMRMRFARVEDARL HHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHCC PRAHGITDKVDDDAPPLADLRSIISRMRAVNGPDISSFQQSYLAAQTKQPPVHEENGLRG CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC NPEIERFDRIRAQILSGDADRASDRSATAVKQQAGFGPPSSLREGSLRDSLLKRPLGSLI CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHH RK CC >Mature Secondary Structure MFGAQPAADVAFFARGAALLESGYQLAPRAGEMDRRDGLKPGNRFLGRVVGCNGSRATIA CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHEECCCCCCEEEE AVAENGETSLTELWSVGKLVSISVGSNRVVALVYSMQTISEGWGEEASNTFRIEVELMGE EEECCCCHHHHHHHHCCCEEEEEECCCEEEEEEEHHHHHHHCCCCCCCCEEEEEEEEEEE VQVGPDGREAFSAGISRYPYLGAIAHRIRVSDLARIYDPGQSDSCVIGKLTQDESLDATI EEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEE HVPSMLAKHFAIVGTTGVGKSTAVTLLLNKAIAADPKLRVLILDPHNEFAAAFPDQAVVI EHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCCCEEEE DTDTLDLPFWFFRLEELAEVIFRGRPPVPDELDILRDVIADAKRAFKGTESGLMRRHTER ECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH SSITADTPVPYRIADLLAMIDERIGRLEGRNDKPHLRSLKNRIVSAVNDPRYHFMFSQNT CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC ITDTIEDTIARIFRIPGDDRPIATFELAGIPSEVVNSLASVLCRMAFEIGLWGNGAIHML HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEE VVCEEAHRYVPADPTLGFLPTRQAIARIAKEGRKYGVSLGIITQRPGELDPTILSQCSTV EEEEHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHH FAMRLANDRDQEIIRSAISNSSISTTSFISSIGNGEAIAFGEAVAVPMRMRFARVEDARL HHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHCC PRAHGITDKVDDDAPPLADLRSIISRMRAVNGPDISSFQQSYLAAQTKQPPVHEENGLRG CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC NPEIERFDRIRAQILSGDADRASDRSATAVKQQAGFGPPSSLREGSLRDSLLKRPLGSLI CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHH RK CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]