| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150397191
Identifier: 150397191
GI number: 150397191
Start: 2039871
End: 2040647
Strand: Reverse
Name: 150397191
Synonym: Smed_1989
Alternate gene names: NA
Gene position: 2040647-2039871 (Counterclockwise)
Preceding gene: 150397192
Following gene: 150397190
Centisome position: 53.96
GC content: 61.13
Gene sequence:
>777_bases ATGGCAGCCGATGGTCCGATTCTGGTGTTCCTTGGTCCGACCCTGCGGCTTGCCGAGGCGGAAAAAATCCTCGATGCCGT TTATCTGCAGCCGGCTGCGCAAGGTGACTTTCTGCTTGCTGCGCATGCCTTTCGTCCGAGCGCCATGGTTCTGATAGACG GACAATTCCAGGACAGACCGGCGGTCCGGCACAAGGAAATCCTCTGGGCGATGGCGCAGGGGATTGTCGTCATCGGAGCC GCCAGCATGGGCGCGCTCAGAGCAGCGGAGCTTGACGCTTTCGGCATGATCGGCGTCGGCCTCATCTACAGGTGGTATCG GCGCTTCAGCCTTGGTCCGCTTTCCGACGCCGCGCCAGACGATGCGATTGCCGTGCTTTCGGGACCGCCGGAACTCGGTT TTCTTCCTTTGACGGATGCACTTGTCGACCTGCAGCGGACCTTTTTCGCCTTGTCGCGAAGCGGTGTCATCCTCCCTTCG GAGCGCGATCGGCTTACAACTATCGCTAGAGATCTGAACTTCCGGGAGCGTTCCCTTGCGGCAGTCTTTCGAGCGGCGGG CCGCGCGCCCGACAGGAGCGGCGAACTCAGAGCGCAAATCATCGGGCAGAAGCGTCGCGATGCGCTGGATGCGCTGCGCA AGGCTCCGGTCCTTCTGGCGCAGCACCGTCAGGCGCACCGCGCTGATGGCTGGATCGCAACGAACACCTTCCTCCGGGAC CTAGAGGCCGGCGGCATTGACTCGAATTTGGTGAACACCTATAAATTGAAACCATAA
Upstream 100 bases:
>100_bases CCGGTGCTGGCCATTTCCGTGGGTGCCGAAGGCGGTGTACATTGCGTGCGAACCGTTCTTCCTGGTGCCTCTCCCTTCTT CGTCTTGCGGTGAGTATGCG
Downstream 100 bases:
>100_bases TTTAGGCATTTTAAAATCGGGGACAGTTTGTGCGATGCGTCTGCTTCGGGACGAGGCCCTCGCATCCGGTGACGCGCACT TAGGTACGCGCTTCTGGATC
Product: TfuA domain-containing protein
Products: NA
Alternate protein names: TfuA Domain Protein Core; TfuA-Like Protein; Domain Protein; TfuA Domain Protein; TfuA Protein; Nifs Protein; Trifolitoxin Related Protein; TfuA Domain-Containing Protein Core; Antibiotic Resistance Protein; TfuA-Like; TfuA-Like Core
Number of amino acids: Translated: 258; Mature: 257
Protein sequence:
>258_residues MAADGPILVFLGPTLRLAEAEKILDAVYLQPAAQGDFLLAAHAFRPSAMVLIDGQFQDRPAVRHKEILWAMAQGIVVIGA ASMGALRAAELDAFGMIGVGLIYRWYRRFSLGPLSDAAPDDAIAVLSGPPELGFLPLTDALVDLQRTFFALSRSGVILPS ERDRLTTIARDLNFRERSLAAVFRAAGRAPDRSGELRAQIIGQKRRDALDALRKAPVLLAQHRQAHRADGWIATNTFLRD LEAGGIDSNLVNTYKLKP
Sequences:
>Translated_258_residues MAADGPILVFLGPTLRLAEAEKILDAVYLQPAAQGDFLLAAHAFRPSAMVLIDGQFQDRPAVRHKEILWAMAQGIVVIGA ASMGALRAAELDAFGMIGVGLIYRWYRRFSLGPLSDAAPDDAIAVLSGPPELGFLPLTDALVDLQRTFFALSRSGVILPS ERDRLTTIARDLNFRERSLAAVFRAAGRAPDRSGELRAQIIGQKRRDALDALRKAPVLLAQHRQAHRADGWIATNTFLRD LEAGGIDSNLVNTYKLKP >Mature_257_residues AADGPILVFLGPTLRLAEAEKILDAVYLQPAAQGDFLLAAHAFRPSAMVLIDGQFQDRPAVRHKEILWAMAQGIVVIGAA SMGALRAAELDAFGMIGVGLIYRWYRRFSLGPLSDAAPDDAIAVLSGPPELGFLPLTDALVDLQRTFFALSRSGVILPSE RDRLTTIARDLNFRERSLAAVFRAAGRAPDRSGELRAQIIGQKRRDALDALRKAPVLLAQHRQAHRADGWIATNTFLRDL EAGGIDSNLVNTYKLKP
Specific function: Unknown
COG id: COG3482
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28089; Mature: 27958
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAADGPILVFLGPTLRLAEAEKILDAVYLQPAAQGDFLLAAHAFRPSAMVLIDGQFQDRP CCCCCCEEEEECCCEEHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEECCCCCCCC AVRHKEILWAMAQGIVVIGAASMGALRAAELDAFGMIGVGLIYRWYRRFSLGPLSDAAPD CHHHHHHHHHHHCCEEEEECCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCC DAIAVLSGPPELGFLPLTDALVDLQRTFFALSRSGVILPSERDRLTTIARDLNFRERSLA CEEEEECCCCCCCEECHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHCCHHHHHHH AVFRAAGRAPDRSGELRAQIIGQKRRDALDALRKAPVLLAQHRQAHRADGWIATNTFLRD HHHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEHHHHHHH LEAGGIDSNLVNTYKLKP HHCCCCCCCCCCEEEECC >Mature Secondary Structure AADGPILVFLGPTLRLAEAEKILDAVYLQPAAQGDFLLAAHAFRPSAMVLIDGQFQDRP CCCCCEEEEECCCEEHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEECCCCCCCC AVRHKEILWAMAQGIVVIGAASMGALRAAELDAFGMIGVGLIYRWYRRFSLGPLSDAAPD CHHHHHHHHHHHCCEEEEECCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCC DAIAVLSGPPELGFLPLTDALVDLQRTFFALSRSGVILPSERDRLTTIARDLNFRERSLA CEEEEECCCCCCCEECHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHCCHHHHHHH AVFRAAGRAPDRSGELRAQIIGQKRRDALDALRKAPVLLAQHRQAHRADGWIATNTFLRD HHHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEHHHHHHH LEAGGIDSNLVNTYKLKP HHCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA