| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150397185
Identifier: 150397185
GI number: 150397185
Start: 2034932
End: 2035639
Strand: Direct
Name: 150397185
Synonym: Smed_1983
Alternate gene names: NA
Gene position: 2034932-2035639 (Clockwise)
Preceding gene: 150397181
Following gene: 150397186
Centisome position: 53.81
GC content: 62.29
Gene sequence:
>708_bases ATGGCGACCCAGACCACGCTGATCCCCGCAACGGAACTGGCGGCGCGCAACCGCGCCCGCTTCCCCAACGAAAGCGCCGA GTACCGGCAAGCCCGAAACGCGCTGCTCGCCGAAGAGATCGAATTGAGGCGCCACCTCGAGCGGGTGGCGGAAATGCGAA GACGACTGCCGCCCGGCGGTGAAGTGGCGAAGACGTACCGCTTTGAGAGCGAGTACGGGGCCGTCACGCTAGCCGATCTC TTCGGCGAGAGGGACACCCTCATCGTCTACAGCTACATGTTTGGTCCGCAACGCGAAAAGCCTTGCCCTATGTGCACCTC CCTGATGGCGGCTTGGGAAGGAAAATTGCCAGATATCGAGCAGCGCGTGTCACTCGCTATGGTCGCCCGTTCGCCGATCG AAAGATTGCTCGCCGCAAAGATGGCTCGTGGCTGGACCCAGTTGAAGGTCTACTCCGATAGCGACGGGGACTTCACCCGC GATTATGTCAGTGCCGGCGACGAAGATGTTCCGGGCTACACCGTGTTTACGCGCAAGGACGGAACGATCCGGCATTTCTG GAGCGCGGAGATCAGCAACGAGATGGCCGATCCGGGCCAGGACCCTCGTGATGCACCGGATCCGGACCCTCTTTGGACCC TGCTCGACACCACACCCGAAGGCCGGGGCGGCGACTGGTACCCGAAACTCGAATACCGTAACGGCTGA
Upstream 100 bases:
>100_bases GCACGCTTTTCGCAAGCCGCGCCTCTTTGACAGGGCTTAACTACGTTGATATCAACGCTCCTGAAGGCGAGAAGCCTCAA AACCCCGGAGGAGAGAGATC
Downstream 100 bases:
>100_bases AGACGTCGGCCGCATCGAAGGCTGCCGCCTGCCCGCCCCCGATCGGAGCGGTGCAGGCGTTGCACTGGCGTCCGCCCTCG AATGGGGAAATTTTTACTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 235; Mature: 234
Protein sequence:
>235_residues MATQTTLIPATELAARNRARFPNESAEYRQARNALLAEEIELRRHLERVAEMRRRLPPGGEVAKTYRFESEYGAVTLADL FGERDTLIVYSYMFGPQREKPCPMCTSLMAAWEGKLPDIEQRVSLAMVARSPIERLLAAKMARGWTQLKVYSDSDGDFTR DYVSAGDEDVPGYTVFTRKDGTIRHFWSAEISNEMADPGQDPRDAPDPDPLWTLLDTTPEGRGGDWYPKLEYRNG
Sequences:
>Translated_235_residues MATQTTLIPATELAARNRARFPNESAEYRQARNALLAEEIELRRHLERVAEMRRRLPPGGEVAKTYRFESEYGAVTLADL FGERDTLIVYSYMFGPQREKPCPMCTSLMAAWEGKLPDIEQRVSLAMVARSPIERLLAAKMARGWTQLKVYSDSDGDFTR DYVSAGDEDVPGYTVFTRKDGTIRHFWSAEISNEMADPGQDPRDAPDPDPLWTLLDTTPEGRGGDWYPKLEYRNG >Mature_234_residues ATQTTLIPATELAARNRARFPNESAEYRQARNALLAEEIELRRHLERVAEMRRRLPPGGEVAKTYRFESEYGAVTLADLF GERDTLIVYSYMFGPQREKPCPMCTSLMAAWEGKLPDIEQRVSLAMVARSPIERLLAAKMARGWTQLKVYSDSDGDFTRD YVSAGDEDVPGYTVFTRKDGTIRHFWSAEISNEMADPGQDPRDAPDPDPLWTLLDTTPEGRGGDWYPKLEYRNG
Specific function: Unknown
COG id: COG4312
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26686; Mature: 26555
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATQTTLIPATELAARNRARFPNESAEYRQARNALLAEEIELRRHLERVAEMRRRLPPGG CCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC EVAKTYRFESEYGAVTLADLFGERDTLIVYSYMFGPQREKPCPMCTSLMAAWEGKLPDIE CHHHHEEECCCCCCEEHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCHH QRVSLAMVARSPIERLLAAKMARGWTQLKVYSDSDGDFTRDYVSAGDEDVPGYTVFTRKD HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCCCCCCCEEEEECCC GTIRHFWSAEISNEMADPGQDPRDAPDPDPLWTLLDTTPEGRGGDWYPKLEYRNG CCEEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ATQTTLIPATELAARNRARFPNESAEYRQARNALLAEEIELRRHLERVAEMRRRLPPGG CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC EVAKTYRFESEYGAVTLADLFGERDTLIVYSYMFGPQREKPCPMCTSLMAAWEGKLPDIE CHHHHEEECCCCCCEEHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCHH QRVSLAMVARSPIERLLAAKMARGWTQLKVYSDSDGDFTRDYVSAGDEDVPGYTVFTRKD HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCCCCCCCEEEEECCC GTIRHFWSAEISNEMADPGQDPRDAPDPDPLWTLLDTTPEGRGGDWYPKLEYRNG CCEEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA