Click here to switch to the map view.

The map label for this gene is yidA [C]

Identifier: 150397147

GI number: 150397147

Start: 1997879

End: 1998631

Strand: Reverse

Name: yidA [C]

Synonym: Smed_1945

Alternate gene names: 150397147

Gene position: 1998631-1997879 (Counterclockwise)

Preceding gene: 150397148

Following gene: 150397145

Centisome position: 52.85

GC content: 63.21

Gene sequence:

>753_bases
ATGGATGTCATGGCTCTTGCGACAGACTACGACGGAACACTCGCCGATTACGGTGCCGTCAGGCCGGAAACTCTGGAGGC
CCTGAAGAGATTTAAGGAGACCGGGCGCAAGCTTCTGCTGGTGACCGGGCGCGAACTGCCTGATTTGAAGAGTGTCTTTC
CTGAAATCGGCCTGTTCGACAAAGTCGTCGCCGAAAATGGCGCGCTGCTTTTTACGCCGGAAACCGGCGAGGAGCGGCCG
CTCGCACCCTCGCCTCCGCCGGCTTTCATCGAGCGCCTGAAGGAGAAGGGCGTGGACCGGATGTCGGTCGGCCGTTCGAT
CGTCGCAACCTGGGAGCCGCACCAGACCGCCGCGCTTGAGGCGATCAACGAACTCGGCCTCGAACTCGAGATCATCTTCA
ACAAGGGCGCCGTCATGGTGCTCCCCACCGGCGTGAACAAGGCCACGGGGCTCAAGGCGGCCTTGAAGGAGATGGGGCTC
TCCTTTGTCAGCGTGGTGGGTGTCGGCGACGCCGAGAACGACCACGCGCTTTTGAGAACGTGCGGCTGCGGAGCCGCGGT
TGCCAACGCCTTGCCCGCGCTCAAGGATACGGCCGACATCGTTCTCGAGGGTGTGCGCGGGGCAGGCGTGGAGCAGTTGA
TCAATCGGATCATAGAACGCGATAATATGTTGAGCGTCGGTGCCCGCCACCGGGCGTCGATCGGCGAGGGTGCCGAGGGA
CAAGCGGAGATTGGGGCGCGTGACCCCCGCTGA

Upstream 100 bases:

>100_bases
CGAGCCGGAACCAGCATTGGCCCTGCACGTTCCACTGTGCAGCACGATGACGGCGTCCAGAATCGGACGGAGGCGGGTGG
CAAAGAGAGGCGGCGCACAG

Downstream 100 bases:

>100_bases
AAAGTCTGCAGCGCCTGCGGGCGCGCGCGCCCGAGCGGATCGAGATGAAGCCCTGCCCGAGGCGTTGAACAGAAGGCTCC
CTATGGTTTCGGTTTTTGCT

Product: HAD family hydrolase

Products: NA

Alternate protein names: PGP 2; PGPase 2 [H]

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MDVMALATDYDGTLADYGAVRPETLEALKRFKETGRKLLLVTGRELPDLKSVFPEIGLFDKVVAENGALLFTPETGEERP
LAPSPPPAFIERLKEKGVDRMSVGRSIVATWEPHQTAALEAINELGLELEIIFNKGAVMVLPTGVNKATGLKAALKEMGL
SFVSVVGVGDAENDHALLRTCGCGAAVANALPALKDTADIVLEGVRGAGVEQLINRIIERDNMLSVGARHRASIGEGAEG
QAEIGARDPR

Sequences:

>Translated_250_residues
MDVMALATDYDGTLADYGAVRPETLEALKRFKETGRKLLLVTGRELPDLKSVFPEIGLFDKVVAENGALLFTPETGEERP
LAPSPPPAFIERLKEKGVDRMSVGRSIVATWEPHQTAALEAINELGLELEIIFNKGAVMVLPTGVNKATGLKAALKEMGL
SFVSVVGVGDAENDHALLRTCGCGAAVANALPALKDTADIVLEGVRGAGVEQLINRIIERDNMLSVGARHRASIGEGAEG
QAEIGARDPR
>Mature_250_residues
MDVMALATDYDGTLADYGAVRPETLEALKRFKETGRKLLLVTGRELPDLKSVFPEIGLFDKVVAENGALLFTPETGEERP
LAPSPPPAFIERLKEKGVDRMSVGRSIVATWEPHQTAALEAINELGLELEIIFNKGAVMVLPTGVNKATGLKAALKEMGL
SFVSVVGVGDAENDHALLRTCGCGAAVANALPALKDTADIVLEGVRGAGVEQLINRIIERDNMLSVGARHRASIGEGAEG
QAEIGARDPR

Specific function: Catalyzes the dephosphorylation of 2-phosphoglycolate [H]

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal SPP-like hydrolase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023214
- InterPro:   IPR013200
- InterPro:   IPR006379
- InterPro:   IPR006382
- InterPro:   IPR006378 [H]

Pfam domain/function: PF08282 Hydrolase_3 [H]

EC number: =3.1.3.18 [H]

Molecular weight: Translated: 26577; Mature: 26577

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVMALATDYDGTLADYGAVRPETLEALKRFKETGRKLLLVTGRELPDLKSVFPEIGLFD
CCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCHHH
KVVAENGALLFTPETGEERPLAPSPPPAFIERLKEKGVDRMSVGRSIVATWEPHQTAALE
HHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHCCEEEEECCCCHHHHHH
AINELGLELEIIFNKGAVMVLPTGVNKATGLKAALKEMGLSFVSVVGVGDAENDHALLRT
HHHHCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCHHHHEEECCCCCCCCHHHHH
CGCGAAVANALPALKDTADIVLEGVRGAGVEQLINRIIERDNMLSVGARHRASIGEGAEG
HCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEECCCHHHCCCCCCCCC
QAEIGARDPR
CCCCCCCCCC
>Mature Secondary Structure
MDVMALATDYDGTLADYGAVRPETLEALKRFKETGRKLLLVTGRELPDLKSVFPEIGLFD
CCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCHHH
KVVAENGALLFTPETGEERPLAPSPPPAFIERLKEKGVDRMSVGRSIVATWEPHQTAALE
HHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHCCEEEEECCCCHHHHHH
AINELGLELEIIFNKGAVMVLPTGVNKATGLKAALKEMGLSFVSVVGVGDAENDHALLRT
HHHHCCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCHHHHEEECCCCCCCCHHHHH
CGCGAAVANALPALKDTADIVLEGVRGAGVEQLINRIIERDNMLSVGARHRASIGEGAEG
HCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEECCCHHHCCCCCCCCC
QAEIGARDPR
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726 [H]