| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150397089
Identifier: 150397089
GI number: 150397089
Start: 1955636
End: 1956673
Strand: Reverse
Name: 150397089
Synonym: Smed_1887
Alternate gene names: NA
Gene position: 1956673-1955636 (Counterclockwise)
Preceding gene: 150397090
Following gene: 150397088
Centisome position: 51.74
GC content: 63.87
Gene sequence:
>1038_bases ATGACATTGGACGAGTTGCTGTCCACCTATGAGCCGCGCCTTGCCGCGGCATTTCGAGAAGCGATCGAGACGATCAAGTC GACGGCTGTTCTCGCCCGCGTGGTCGAGCGTCTCGATCGTGGTGACGTTAACGGTGCTGTTGAGGCCATGCAAATCGAGC CCGAGGCGTTCTCCGCGCTTGAAATCGCGCTGCAGGAGGCATTCAACGCCGGCGGCACCAATGCTGTCGGCGAGTTGCCG AAGGTCATGGACCCACAGGGCAATCGCGTGATTTGGCGTTTCGGCGTCCGCAACCCTGCTGCCGAGGCGATCCTGCGACA CCTATCCTCGACGATGGTCACGCACATCACCGATGACCAGCGGCAGGGCATCCGCCAGGCGCTGGAGCAGGGGCTTGCCA GAGGCGCCAGCCCGAGATTGACTGCACTCGATGTTGTCGGCCGGCAGAGCCGTGTCACCGGCCGCCGAGAGGGCGGTGTG ATCGGTCTGACCCGATACCAGATAGAGTTCATCGAGCGGGCGCGCCTGCATCTTGCTTCCGGCGACGCGGAGCAGATGAA CCGGTACTTCGAGCTCAAGACGCGCGACAAGCGCTTCGACAGGACCGTCATGGCCGCGGTTAGGGCGGGCAAGCCGGTCA CCGGCGAGGCCCTCACCAAGATAGTTGGCCGGTTGCGCGACAAGAACCTGCTTCTCCGCGGCGAGATGTTGGCGCGGACC GAAACGATGATGGCGCTCAGCTCCGCCCGCGACGAGACAATGCGGCAGCAGATCGAGGCAGGCAAGGTCGAAGCACGGGA TATCACGAAGGTATGGCGGTCCGCCGGCGACAGCCGTGTGCGGCACACCCATCGTGTCCTCAACGGCAAGAGCGTCGGGA TGGATGAGGTATTTCAGAGCCCATCTGGCGCGCTTCTCCGGTTCCCGGGCGACCCGCGCGCGCCGATATCGGAGATTTCC GGCTGCCGGTGCAGGCTCGAATACAAGGTGGATCACATCGGTGCGGTTGTGCGCCGGTACCGGGCAGAGGTCGTATGA
Upstream 100 bases:
>100_bases GCACGTCTCGCTGAGCAATTTCGGGAGCCAAGAAGCGGCCATTACTCCGCCTGCAGGTTGGCATTAGGTACTTGGAAGCA GTTCTGCGAAAGGCAACCGC
Downstream 100 bases:
>100_bases TGGCAACGCTCTCCTTTAGCGCTGCCGTGGCGCAGTGGGCTGACAAGGTCGAGGGTGCAGTCGAAGCCATCTTCAAGGAG GCGACACACGAGGTCGTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 345; Mature: 344
Protein sequence:
>345_residues MTLDELLSTYEPRLAAAFREAIETIKSTAVLARVVERLDRGDVNGAVEAMQIEPEAFSALEIALQEAFNAGGTNAVGELP KVMDPQGNRVIWRFGVRNPAAEAILRHLSSTMVTHITDDQRQGIRQALEQGLARGASPRLTALDVVGRQSRVTGRREGGV IGLTRYQIEFIERARLHLASGDAEQMNRYFELKTRDKRFDRTVMAAVRAGKPVTGEALTKIVGRLRDKNLLLRGEMLART ETMMALSSARDETMRQQIEAGKVEARDITKVWRSAGDSRVRHTHRVLNGKSVGMDEVFQSPSGALLRFPGDPRAPISEIS GCRCRLEYKVDHIGAVVRRYRAEVV
Sequences:
>Translated_345_residues MTLDELLSTYEPRLAAAFREAIETIKSTAVLARVVERLDRGDVNGAVEAMQIEPEAFSALEIALQEAFNAGGTNAVGELP KVMDPQGNRVIWRFGVRNPAAEAILRHLSSTMVTHITDDQRQGIRQALEQGLARGASPRLTALDVVGRQSRVTGRREGGV IGLTRYQIEFIERARLHLASGDAEQMNRYFELKTRDKRFDRTVMAAVRAGKPVTGEALTKIVGRLRDKNLLLRGEMLART ETMMALSSARDETMRQQIEAGKVEARDITKVWRSAGDSRVRHTHRVLNGKSVGMDEVFQSPSGALLRFPGDPRAPISEIS GCRCRLEYKVDHIGAVVRRYRAEVV >Mature_344_residues TLDELLSTYEPRLAAAFREAIETIKSTAVLARVVERLDRGDVNGAVEAMQIEPEAFSALEIALQEAFNAGGTNAVGELPK VMDPQGNRVIWRFGVRNPAAEAILRHLSSTMVTHITDDQRQGIRQALEQGLARGASPRLTALDVVGRQSRVTGRREGGVI GLTRYQIEFIERARLHLASGDAEQMNRYFELKTRDKRFDRTVMAAVRAGKPVTGEALTKIVGRLRDKNLLLRGEMLARTE TMMALSSARDETMRQQIEAGKVEARDITKVWRSAGDSRVRHTHRVLNGKSVGMDEVFQSPSGALLRFPGDPRAPISEISG CRCRLEYKVDHIGAVVRRYRAEVV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38343; Mature: 38211
Theoretical pI: Translated: 10.31; Mature: 10.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLDELLSTYEPRLAAAFREAIETIKSTAVLARVVERLDRGDVNGAVEAMQIEPEAFSAL CCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEECHHHHHHH EIALQEAFNAGGTNAVGELPKVMDPQGNRVIWRFGVRNPAAEAILRHLSSTMVTHITDDQ HHHHHHHHCCCCCCHHHCCCHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHH RQGIRQALEQGLARGASPRLTALDVVGRQSRVTGRREGGVIGLTRYQIEFIERARLHLAS HHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHCC GDAEQMNRYFELKTRDKRFDRTVMAAVRAGKPVTGEALTKIVGRLRDKNLLLRGEMLART CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHH ETMMALSSARDETMRQQIEAGKVEARDITKVWRSAGDSRVRHTHRVLNGKSVGMDEVFQS HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHCC PSGALLRFPGDPRAPISEISGCRCRLEYKVDHIGAVVRRYRAEVV CCCCEEECCCCCCCCHHHCCCCEEEEEECHHHHHHHHHHHHHHCC >Mature Secondary Structure TLDELLSTYEPRLAAAFREAIETIKSTAVLARVVERLDRGDVNGAVEAMQIEPEAFSAL CHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEECHHHHHHH EIALQEAFNAGGTNAVGELPKVMDPQGNRVIWRFGVRNPAAEAILRHLSSTMVTHITDDQ HHHHHHHHCCCCCCHHHCCCHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHH RQGIRQALEQGLARGASPRLTALDVVGRQSRVTGRREGGVIGLTRYQIEFIERARLHLAS HHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHCC GDAEQMNRYFELKTRDKRFDRTVMAAVRAGKPVTGEALTKIVGRLRDKNLLLRGEMLART CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHH ETMMALSSARDETMRQQIEAGKVEARDITKVWRSAGDSRVRHTHRVLNGKSVGMDEVFQS HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHCC PSGALLRFPGDPRAPISEISGCRCRLEYKVDHIGAVVRRYRAEVV CCCCEEECCCCCCCCHHHCCCCEEEEEECHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA