| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is kefA [C]
Identifier: 150397003
GI number: 150397003
Start: 1883047
End: 1885626
Strand: Reverse
Name: kefA [C]
Synonym: Smed_1800
Alternate gene names: 150397003
Gene position: 1885626-1883047 (Counterclockwise)
Preceding gene: 150397004
Following gene: 150397001
Centisome position: 49.86
GC content: 60.62
Gene sequence:
>2580_bases TTGCATCTCCTCGAAAATGTGAGGGCTTTTTCAATCGCCCTATTTCTCGGTTTGCTGGCTCTCGGTGCGCTGACGCTCGC AGCCGACGGACCCGCGGTTGCGCAGGAATCCGAGCCGAGCGCTCGGCAAAGCCGGCCAGCAGAACCGGCAGTACCCATCC AGCCGGCCCAGTCCTCCCAGCCCGCGCCGCAGGCTGCACCGACAGGACCCGCTGCGGGGACCGGAGGCGATCAGCCGTCT GCCGCCGCATCGCCGGTATTGCAGCAGGCGGAGGATCAGCTTGCCCAGGCGGATCGAGAGCTGAAGCGGATCACTGAGCG GACCAACGCCGTCGAAGACGACGATGCCATGCTCGCGGAACTCAGGGCGCAGGTCGACGAGCTTTCAAAGCAGATCATTG CGGCCTCTGTTCCCACCCGTCCGAGGCTCGATGAAATAAAGGCGAGGCTGACGGAGCTCGGCGACCCGCCCGGTGAGGGA CAGCCGCCGGAAGACGCGGTCATCACCGATGAACGCAAACGTCTCCTTGCCGAGCGTGGCGCGATCAATGCTCTGACGGG GAGGGCGGAGAATCTCTCGATCGAGGCGAGGAAACTTGCCAACAGAATTACCGCGACACGCCGGGCGATCTTCTCCAATA CCCTGCTGAGACATACCGATGTTTCGGTAGAGATGTTGAGCGAGGCCGCCACGGCAACGCTCCATGAAGCGATGGCCCTG TCGCGAAGCATCGGCGGGTGGCTGACATTCGCCTGGAACTACAAACGCGTGCCTTTGCTGAGCGCTCTCTTTCTCTCCCT ATGCGCGGCGCTGCTCTTTCTCGTTGGCGGTTACAGGCTTTTTTCGCCAGTGCTGATGCGTCCCGAGGAGGCGGACGAGC CGACCTACTTCCGGCGGCTTTCGCTGGCGTTCTGGTCGACGCTCATTCCGACCGTGGCACTCGCCGCATTTGCCATGTCG AGCTATTTCTTCCTCAGCAGCTTCAATATCCTGCGTCCTGATATCGCGCCCATTATCGCGATCACACTTGCCATGGGCGT CGTACTGTTCTTCATAGCCAGGCTTGCCAGCGCCGTTCTGTCGCCGAGCCGGTCGAGCTGGCGGCTTGTACGTGTTTCGG ACCGTGGCGCGAAGATGTTGATGGTGCCGATTTTTGCCATGGCGCTCGTCAACGGCCTCGACTATCTGCTCGGCAGCATC AGCGAGTCTCTCGGCTCTCCGGTGGTGCTGACGATTGCCAAGAGCTTCGTGGCATCTATCATCATCGGTCTCATTCTGAT GTCGATGGCGTGGATCCGGCCCGTGCTAAGGGGCGATGAGCCCTATGATGCACCGGGACATCCCTGGCCGCGGGTGATTT CGTTCTCCTTCCTTCTGCTTGGTGCGGCCCTCATCGCGACCGCTTTGTCGGGCTATGTCGGCCTGGCACGCTTCATCGCG ACGCAGATCACAGTGACAAGCGCGATCCTGGTCACTGTCTATATCGGTCTCCTGACGGGGAAGTCGGTGTCCAGACAGGG CGCTTTCGCCGAAACGGTTGCCGGGCGGTATCTGGAACGCCGCTTCCAGCTGGAGCCGGTCGCGCTCGATCAGTTCGGCC TCTTTGCCGGCCTCGGCATCTATGTGCTCGTTCTGGCGTTCTTCATCCCGCTCATATTGTTGCAGTGGGGCTTCAAGACC GCCGACATCGAATCCTGGACTTACCGTGTGCTGACGGAAATCAGGGTCGGTACGATCACGATTTCGCTGGTTGGCATTCT CGCGGGGATACTGCTCTTCGCACTCGGATTTCTCGTCACACGCTGGGTTCAGCGTTGGATCGACCGCAATGTCATGGCGC GTAGCCGGGTCGACGCAGGCGTGCGCAACTCCATTCGTACCGGAATCGGCTATATGGGTGTGGGCGTTGCCGGGCTTATC GGCCTGTCCGCCGCAGGCATTGATCTTTCGAGCCTAGCCCTGGTGGCCGGCGCTCTCTCCCTCGGCGTCGGTTTCGGCCT GCAGAACATCGTCTCCAACTTCGTTTCCGGTCTGATCCTTCTCGTGGAGCGTCCCTTCAAGGTAGGCGACTGGATCGTCA GCGGCACGACCGAAGGCTTCGTGCGGCGTATCTCCGTCCGCGCAACCGAAATCGAGACCTTTCAACACCAGTCGATCATG ATGCCGAACTCGTTGCTCATCAACGCCTCGGTCGGAAACTGGACTCATCGGAACAAGCTCGGCCGGTCGGAAATTGCAGT AACGGTTACCTATGACAGCGACCCGCGGCGGATAATCGAACTGCTGCACGACATCGCCGCGGCTCATCCGATGGTGCTCA AAAATCCAGCCCCGAATGTCGGCTTCACCGCCTTCGGCGACGATCGAATGACGTTTGAGTTGCGCATCTATGTCGCTGAC GTGCTGACGGCCGGTGGCGTGCGCAACGATCTTCGTGTCTCGATCTACGAGCGCTTTCGCGACGAGGGTATAGGGGCGCC GTTCCCGATGAAGATCGAGGACATTACGCCTGAAGAAGAAGTCGAAGGCGCGAACGAAGAACCTTCGGTTGTCGACGAAG AGAAGGTCCGATCTGGCTGA
Upstream 100 bases:
>100_bases CGCAGAGTTTGCATCATTTTGCCGTTATGCGTGCCCAGATCAGTGAGCTGGCGGAGCCTGGAGCGGTTCTGATCGCGCGG GATTGTCGAAGGATAGGAAA
Downstream 100 bases:
>100_bases AGCGAAGCGCAGGACGCCAGCGCCCCGAAACTTCGACTGCTCAATAGAGTGAGGGAGGAGCGGTAATGCCGCTTCTCCCT GCACATCCGGCCTGGATCCG
Product: mechanosensitive ion channel MscS
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 859; Mature: 859
Protein sequence:
>859_residues MHLLENVRAFSIALFLGLLALGALTLAADGPAVAQESEPSARQSRPAEPAVPIQPAQSSQPAPQAAPTGPAAGTGGDQPS AAASPVLQQAEDQLAQADRELKRITERTNAVEDDDAMLAELRAQVDELSKQIIAASVPTRPRLDEIKARLTELGDPPGEG QPPEDAVITDERKRLLAERGAINALTGRAENLSIEARKLANRITATRRAIFSNTLLRHTDVSVEMLSEAATATLHEAMAL SRSIGGWLTFAWNYKRVPLLSALFLSLCAALLFLVGGYRLFSPVLMRPEEADEPTYFRRLSLAFWSTLIPTVALAAFAMS SYFFLSSFNILRPDIAPIIAITLAMGVVLFFIARLASAVLSPSRSSWRLVRVSDRGAKMLMVPIFAMALVNGLDYLLGSI SESLGSPVVLTIAKSFVASIIIGLILMSMAWIRPVLRGDEPYDAPGHPWPRVISFSFLLLGAALIATALSGYVGLARFIA TQITVTSAILVTVYIGLLTGKSVSRQGAFAETVAGRYLERRFQLEPVALDQFGLFAGLGIYVLVLAFFIPLILLQWGFKT ADIESWTYRVLTEIRVGTITISLVGILAGILLFALGFLVTRWVQRWIDRNVMARSRVDAGVRNSIRTGIGYMGVGVAGLI GLSAAGIDLSSLALVAGALSLGVGFGLQNIVSNFVSGLILLVERPFKVGDWIVSGTTEGFVRRISVRATEIETFQHQSIM MPNSLLINASVGNWTHRNKLGRSEIAVTVTYDSDPRRIIELLHDIAAAHPMVLKNPAPNVGFTAFGDDRMTFELRIYVAD VLTAGGVRNDLRVSIYERFRDEGIGAPFPMKIEDITPEEEVEGANEEPSVVDEEKVRSG
Sequences:
>Translated_859_residues MHLLENVRAFSIALFLGLLALGALTLAADGPAVAQESEPSARQSRPAEPAVPIQPAQSSQPAPQAAPTGPAAGTGGDQPS AAASPVLQQAEDQLAQADRELKRITERTNAVEDDDAMLAELRAQVDELSKQIIAASVPTRPRLDEIKARLTELGDPPGEG QPPEDAVITDERKRLLAERGAINALTGRAENLSIEARKLANRITATRRAIFSNTLLRHTDVSVEMLSEAATATLHEAMAL SRSIGGWLTFAWNYKRVPLLSALFLSLCAALLFLVGGYRLFSPVLMRPEEADEPTYFRRLSLAFWSTLIPTVALAAFAMS SYFFLSSFNILRPDIAPIIAITLAMGVVLFFIARLASAVLSPSRSSWRLVRVSDRGAKMLMVPIFAMALVNGLDYLLGSI SESLGSPVVLTIAKSFVASIIIGLILMSMAWIRPVLRGDEPYDAPGHPWPRVISFSFLLLGAALIATALSGYVGLARFIA TQITVTSAILVTVYIGLLTGKSVSRQGAFAETVAGRYLERRFQLEPVALDQFGLFAGLGIYVLVLAFFIPLILLQWGFKT ADIESWTYRVLTEIRVGTITISLVGILAGILLFALGFLVTRWVQRWIDRNVMARSRVDAGVRNSIRTGIGYMGVGVAGLI GLSAAGIDLSSLALVAGALSLGVGFGLQNIVSNFVSGLILLVERPFKVGDWIVSGTTEGFVRRISVRATEIETFQHQSIM MPNSLLINASVGNWTHRNKLGRSEIAVTVTYDSDPRRIIELLHDIAAAHPMVLKNPAPNVGFTAFGDDRMTFELRIYVAD VLTAGGVRNDLRVSIYERFRDEGIGAPFPMKIEDITPEEEVEGANEEPSVVDEEKVRSG >Mature_859_residues MHLLENVRAFSIALFLGLLALGALTLAADGPAVAQESEPSARQSRPAEPAVPIQPAQSSQPAPQAAPTGPAAGTGGDQPS AAASPVLQQAEDQLAQADRELKRITERTNAVEDDDAMLAELRAQVDELSKQIIAASVPTRPRLDEIKARLTELGDPPGEG QPPEDAVITDERKRLLAERGAINALTGRAENLSIEARKLANRITATRRAIFSNTLLRHTDVSVEMLSEAATATLHEAMAL SRSIGGWLTFAWNYKRVPLLSALFLSLCAALLFLVGGYRLFSPVLMRPEEADEPTYFRRLSLAFWSTLIPTVALAAFAMS SYFFLSSFNILRPDIAPIIAITLAMGVVLFFIARLASAVLSPSRSSWRLVRVSDRGAKMLMVPIFAMALVNGLDYLLGSI SESLGSPVVLTIAKSFVASIIIGLILMSMAWIRPVLRGDEPYDAPGHPWPRVISFSFLLLGAALIATALSGYVGLARFIA TQITVTSAILVTVYIGLLTGKSVSRQGAFAETVAGRYLERRFQLEPVALDQFGLFAGLGIYVLVLAFFIPLILLQWGFKT ADIESWTYRVLTEIRVGTITISLVGILAGILLFALGFLVTRWVQRWIDRNVMARSRVDAGVRNSIRTGIGYMGVGVAGLI GLSAAGIDLSSLALVAGALSLGVGFGLQNIVSNFVSGLILLVERPFKVGDWIVSGTTEGFVRRISVRATEIETFQHQSIM MPNSLLINASVGNWTHRNKLGRSEIAVTVTYDSDPRRIIELLHDIAAAHPMVLKNPAPNVGFTAFGDDRMTFELRIYVAD VLTAGGVRNDLRVSIYERFRDEGIGAPFPMKIEDITPEEEVEGANEEPSVVDEEKVRSG
Specific function: Unknown
COG id: COG3264
COG function: function code M; Small-conductance mechanosensitive channel
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mscS (TC 1.A.23) family [H]
Homologues:
Organism=Escherichia coli, GI1786670, Length=245, Percent_Identity=33.469387755102, Blast_Score=142, Evalue=6e-35, Organism=Escherichia coli, GI2367355, Length=262, Percent_Identity=30.5343511450382, Blast_Score=136, Evalue=5e-33, Organism=Escherichia coli, GI1789291, Length=249, Percent_Identity=26.1044176706827, Blast_Score=96, Evalue=7e-21, Organism=Escherichia coli, GI1787591, Length=290, Percent_Identity=26.8965517241379, Blast_Score=84, Evalue=4e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010920 - InterPro: IPR011066 - InterPro: IPR006685 - InterPro: IPR006686 - InterPro: IPR011014 [H]
Pfam domain/function: PF00924 MS_channel [H]
EC number: NA
Molecular weight: Translated: 92984; Mature: 92984
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLLENVRAFSIALFLGLLALGALTLAADGPAVAQESEPSARQSRPAEPAVPIQPAQSSQ CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC PAPQAAPTGPAAGTGGDQPSAAASPVLQQAEDQLAQADRELKRITERTNAVEDDDAMLAE CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH LRAQVDELSKQIIAASVPTRPRLDEIKARLTELGDPPGEGQPPEDAVITDERKRLLAERG HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC AINALTGRAENLSIEARKLANRITATRRAIFSNTLLRHTDVSVEMLSEAATATLHEAMAL CCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH SRSIGGWLTFAWNYKRVPLLSALFLSLCAALLFLVGGYRLFSPVLMRPEEADEPTYFRRL HHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHH SLAFWSTLIPTVALAAFAMSSYFFLSSFNILRPDIAPIIAITLAMGVVLFFIARLASAVL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH SPSRSSWRLVRVSDRGAKMLMVPIFAMALVNGLDYLLGSISESLGSPVVLTIAKSFVASI CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH IIGLILMSMAWIRPVLRGDEPYDAPGHPWPRVISFSFLLLGAALIATALSGYVGLARFIA HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TQITVTSAILVTVYIGLLTGKSVSRQGAFAETVAGRYLERRFQLEPVALDQFGLFAGLGI HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH YVLVLAFFIPLILLQWGFKTADIESWTYRVLTEIRVGTITISLVGILAGILLFALGFLVT HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RWVQRWIDRNVMARSRVDAGVRNSIRTGIGYMGVGVAGLIGLSAAGIDLSSLALVAGALS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH LGVGFGLQNIVSNFVSGLILLVERPFKVGDWIVSGTTEGFVRRISVRATEIETFQHQSIM HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCEE MPNSLLINASVGNWTHRNKLGRSEIAVTVTYDSDPRRIIELLHDIAAAHPMVLKNPAPNV CCCCEEEECCCCCCHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEECCCCCCC GFTAFGDDRMTFELRIYVADVLTAGGVRNDLRVSIYERFRDEGIGAPFPMKIEDITPEEE CEEEECCCCEEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCHHH VEGANEEPSVVDEEKVRSG HCCCCCCCCCCCHHHHCCC >Mature Secondary Structure MHLLENVRAFSIALFLGLLALGALTLAADGPAVAQESEPSARQSRPAEPAVPIQPAQSSQ CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC PAPQAAPTGPAAGTGGDQPSAAASPVLQQAEDQLAQADRELKRITERTNAVEDDDAMLAE CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH LRAQVDELSKQIIAASVPTRPRLDEIKARLTELGDPPGEGQPPEDAVITDERKRLLAERG HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC AINALTGRAENLSIEARKLANRITATRRAIFSNTLLRHTDVSVEMLSEAATATLHEAMAL CCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH SRSIGGWLTFAWNYKRVPLLSALFLSLCAALLFLVGGYRLFSPVLMRPEEADEPTYFRRL HHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHH SLAFWSTLIPTVALAAFAMSSYFFLSSFNILRPDIAPIIAITLAMGVVLFFIARLASAVL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH SPSRSSWRLVRVSDRGAKMLMVPIFAMALVNGLDYLLGSISESLGSPVVLTIAKSFVASI CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH IIGLILMSMAWIRPVLRGDEPYDAPGHPWPRVISFSFLLLGAALIATALSGYVGLARFIA HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TQITVTSAILVTVYIGLLTGKSVSRQGAFAETVAGRYLERRFQLEPVALDQFGLFAGLGI HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH YVLVLAFFIPLILLQWGFKTADIESWTYRVLTEIRVGTITISLVGILAGILLFALGFLVT HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RWVQRWIDRNVMARSRVDAGVRNSIRTGIGYMGVGVAGLIGLSAAGIDLSSLALVAGALS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH LGVGFGLQNIVSNFVSGLILLVERPFKVGDWIVSGTTEGFVRRISVRATEIETFQHQSIM HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCEE MPNSLLINASVGNWTHRNKLGRSEIAVTVTYDSDPRRIIELLHDIAAAHPMVLKNPAPNV CCCCEEEECCCCCCHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEECCCCCCC GFTAFGDDRMTFELRIYVADVLTAGGVRNDLRVSIYERFRDEGIGAPFPMKIEDITPEEE CEEEECCCCEEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCHHH VEGANEEPSVVDEEKVRSG HCCCCCCCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]