| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is hisD1 [H]
Identifier: 150396916
GI number: 150396916
Start: 1792392
End: 1793690
Strand: Reverse
Name: hisD1 [H]
Synonym: Smed_1713
Alternate gene names: 150396916
Gene position: 1793690-1792392 (Counterclockwise)
Preceding gene: 150396922
Following gene: 150396913
Centisome position: 47.43
GC content: 61.74
Gene sequence:
>1299_bases ATGGCATCGCGTCTCAGTGCTTTGGACGGCAAGTTCACTCAGATCAAGAAACCTGGCCGCGATGCGGTCTCCGACACGGC TCCGGTTGAGAAGACGGTCAAGGAGATCATCGCGAACGTGCGCGAGCGGGGCGACGCCGCTGTTCGCGAATATTCGGCAG CCTTCGACAAAGTGGAGCTGGAAAAATTCGAAGTAAGCCAGGAGGAGAGGCTGAAGGCTGTCGCGGAACTCGACCCGCAG ACCCGCGAAGACACCGAATTCGCTATTGCGAATGTCCGCGCCTTTGCAGAGGCTCAGCTCAAGACCATCCTCCCGCTGGA GATCGAGACGCTTCCCGGCCTGCACCTCGGCCACCGTGTCATTCCGATCGAAATCGTGGGCTGCTACGTACCCGGCGGTC GCTATCCCCTCCTGTCCGCTCCGGTCATGACCATCGTGCCGGCCAAAGTCGCCGGTTGCGATCAGGTCATCGCCTGCCTC CCGCCGAATGCACATCCTGCAATGATTGCCGGCTGCCATCTGTCCGGCGCTGATCGAATCTTCCGCGTGGGTGGAGCCCA GGCGATCGCAGCAATGGCATCCGGAACCGAAACCATCCCTGCAGTCGACAAGATCGTAGGGCCCGGCAACGCATTCGTAA ACGAAGCCAAGCGCCAGGTGTTCGGTCAGGTCGGTATCGACCAGCTTGCCGGTCCGAGCGAAATCTTCATCGTCGCTGAC GAGACCGGCAAGGCGGCGATGATTGCCACCGACCTCCTCGCTCAGGCGGAACATGACGTTCGCACCCGCGTCGGCCTGAT CACGACCGATCGCAAACTCGCCGAAGAGACCCTGGTCGAAGTCGAAAAGCAGCTCCAGGATCTCTCCACTGCCAACGTGG CCTCGGTCGCCTGGAAAGACTATGGCGAGATTACCGTCTGCGAAGACGAAACAACCATGATTGCTTACTCGGACTACATC GCAGCCGAGCACCTTCAGGTCCACACCCGCGACCCGCAGGCGACAGCCAGGAAGCTCCGCAACTATGGTTCGCTGTTCAT TGGCGAACTGGCGAGCGTGGTTTACTCGGATAAGTGCTGCGGCACCAACCACACTCTCCCGACCATGGCGGCGGGTCGCT ACACGGGCGGCCTCTGGGTCGGTTCCTACCTCAAGACCTGCACGCACCAATGGTTGGATGAACGCGGCGTTGCCGCCGTG GCCCCAGCCGCCGTGCGGCAAAGCGCTACGGAGCGGCTCGAAGGCCATCGTCGCGCAGCTGCCCTGAGGCTCAGCCCCCA GCAGTTCGCTGCAGAGTAA
Upstream 100 bases:
>100_bases GTCAAAGTGGTGAGAATACTGAACAGGTGGTTTGTGGGCAATTGCCCGTCCGCAGCGGTTCAACGATGCTGAGTGCACAT CACCCACAAAGGAGCTTCAA
Downstream 100 bases:
>100_bases TCGCCTCCCAGGCGTATAGAGCGGGATGATGAAAACTCTGCGCCGCTTTCCGCATCCCGCTCTAATTTTTTGGAATCTAT CAGGCTCATGATTGCAGTGA
Product: histidinol dehydrogenase
Products: NA
Alternate protein names: HDH 1 [H]
Number of amino acids: Translated: 432; Mature: 431
Protein sequence:
>432_residues MASRLSALDGKFTQIKKPGRDAVSDTAPVEKTVKEIIANVRERGDAAVREYSAAFDKVELEKFEVSQEERLKAVAELDPQ TREDTEFAIANVRAFAEAQLKTILPLEIETLPGLHLGHRVIPIEIVGCYVPGGRYPLLSAPVMTIVPAKVAGCDQVIACL PPNAHPAMIAGCHLSGADRIFRVGGAQAIAAMASGTETIPAVDKIVGPGNAFVNEAKRQVFGQVGIDQLAGPSEIFIVAD ETGKAAMIATDLLAQAEHDVRTRVGLITTDRKLAEETLVEVEKQLQDLSTANVASVAWKDYGEITVCEDETTMIAYSDYI AAEHLQVHTRDPQATARKLRNYGSLFIGELASVVYSDKCCGTNHTLPTMAAGRYTGGLWVGSYLKTCTHQWLDERGVAAV APAAVRQSATERLEGHRRAAALRLSPQQFAAE
Sequences:
>Translated_432_residues MASRLSALDGKFTQIKKPGRDAVSDTAPVEKTVKEIIANVRERGDAAVREYSAAFDKVELEKFEVSQEERLKAVAELDPQ TREDTEFAIANVRAFAEAQLKTILPLEIETLPGLHLGHRVIPIEIVGCYVPGGRYPLLSAPVMTIVPAKVAGCDQVIACL PPNAHPAMIAGCHLSGADRIFRVGGAQAIAAMASGTETIPAVDKIVGPGNAFVNEAKRQVFGQVGIDQLAGPSEIFIVAD ETGKAAMIATDLLAQAEHDVRTRVGLITTDRKLAEETLVEVEKQLQDLSTANVASVAWKDYGEITVCEDETTMIAYSDYI AAEHLQVHTRDPQATARKLRNYGSLFIGELASVVYSDKCCGTNHTLPTMAAGRYTGGLWVGSYLKTCTHQWLDERGVAAV APAAVRQSATERLEGHRRAAALRLSPQQFAAE >Mature_431_residues ASRLSALDGKFTQIKKPGRDAVSDTAPVEKTVKEIIANVRERGDAAVREYSAAFDKVELEKFEVSQEERLKAVAELDPQT REDTEFAIANVRAFAEAQLKTILPLEIETLPGLHLGHRVIPIEIVGCYVPGGRYPLLSAPVMTIVPAKVAGCDQVIACLP PNAHPAMIAGCHLSGADRIFRVGGAQAIAAMASGTETIPAVDKIVGPGNAFVNEAKRQVFGQVGIDQLAGPSEIFIVADE TGKAAMIATDLLAQAEHDVRTRVGLITTDRKLAEETLVEVEKQLQDLSTANVASVAWKDYGEITVCEDETTMIAYSDYIA AEHLQVHTRDPQATARKLRNYGSLFIGELASVVYSDKCCGTNHTLPTMAAGRYTGGLWVGSYLKTCTHQWLDERGVAAVA PAAVRQSATERLEGHRRAAALRLSPQQFAAE
Specific function: Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine [H]
COG id: COG0141
COG function: function code E; Histidinol dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the histidinol dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1788331, Length=409, Percent_Identity=37.8973105134474, Blast_Score=272, Evalue=4e-74, Organism=Saccharomyces cerevisiae, GI6319819, Length=426, Percent_Identity=35.4460093896714, Blast_Score=228, Evalue=1e-60,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016161 - InterPro: IPR022695 - InterPro: IPR001692 - InterPro: IPR012131 [H]
Pfam domain/function: PF00815 Histidinol_dh [H]
EC number: =1.1.1.23 [H]
Molecular weight: Translated: 46541; Mature: 46410
Theoretical pI: Translated: 5.49; Mature: 5.49
Prosite motif: PS00611 HISOL_DEHYDROGENASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASRLSALDGKFTQIKKPGRDAVSDTAPVEKTVKEIIANVRERGDAAVREYSAAFDKVEL CCCCHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH EKFEVSQEERLKAVAELDPQTREDTEFAIANVRAFAEAQLKTILPLEIETLPGLHLGHRV HHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEE IPIEIVGCYVPGGRYPLLSAPVMTIVPAKVAGCDQVIACLPPNAHPAMIAGCHLSGADRI EEEEEEEEEECCCCCCCCCCCHHHHHCCHHCCCCCEEEECCCCCCCCEEEEEECCCCCCE FRVGGAQAIAAMASGTETIPAVDKIVGPGNAFVNEAKRQVFGQVGIDQLAGPSEIFIVAD EECCCHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCHHHCCCCCEEEEEEC ETGKAAMIATDLLAQAEHDVRTRVGLITTDRKLAEETLVEVEKQLQDLSTANVASVAWKD CCCCCHHHHHHHHHHHHHHHHHHHCEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC YGEITVCEDETTMIAYSDYIAAEHLQVHTRDPQATARKLRNYGSLFIGELASVVYSDKCC CCCEEEECCCCEEEEEHHHHHHHHEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCC GTNHTLPTMAAGRYTGGLWVGSYLKTCTHQWLDERGVAAVAPAAVRQSATERLEGHRRAA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH ALRLSPQQFAAE EEEECHHHHCCC >Mature Secondary Structure ASRLSALDGKFTQIKKPGRDAVSDTAPVEKTVKEIIANVRERGDAAVREYSAAFDKVEL CCCHHHCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH EKFEVSQEERLKAVAELDPQTREDTEFAIANVRAFAEAQLKTILPLEIETLPGLHLGHRV HHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEE IPIEIVGCYVPGGRYPLLSAPVMTIVPAKVAGCDQVIACLPPNAHPAMIAGCHLSGADRI EEEEEEEEEECCCCCCCCCCCHHHHHCCHHCCCCCEEEECCCCCCCCEEEEEECCCCCCE FRVGGAQAIAAMASGTETIPAVDKIVGPGNAFVNEAKRQVFGQVGIDQLAGPSEIFIVAD EECCCHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCHHHCCCCCEEEEEEC ETGKAAMIATDLLAQAEHDVRTRVGLITTDRKLAEETLVEVEKQLQDLSTANVASVAWKD CCCCCHHHHHHHHHHHHHHHHHHHCEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC YGEITVCEDETTMIAYSDYIAAEHLQVHTRDPQATARKLRNYGSLFIGELASVVYSDKCC CCCEEEECCCCEEEEEHHHHHHHHEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCC GTNHTLPTMAAGRYTGGLWVGSYLKTCTHQWLDERGVAAVAPAAVRQSATERLEGHRRAA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH ALRLSPQQFAAE EEEECHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA