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The map label for this gene is xynB [H]

Identifier: 150396913

GI number: 150396913

Start: 1787907

End: 1789532

Strand: Reverse

Name: xynB [H]

Synonym: Smed_1710

Alternate gene names: 150396913

Gene position: 1789532-1787907 (Counterclockwise)

Preceding gene: 150396916

Following gene: 150396912

Centisome position: 47.32

GC content: 62.36

Gene sequence:

>1626_bases
ATGACCGCGACAATCCGCAATCCGGTTCTGCCGGGCTTCAATCCAGACCCATCCATCTGCCGGGTCGGTGACGATTATTA
CATCGCGACCTCGACATTCGAATGGTATCCAGGCGTACAGATCCACCATTCGCGCGACCTCGTGAACTGGCGGCTGGTGC
GTCGTCCGCTCGAGCGGGCAAGCCAGCTCGACATGCGCGGCAATCCCGATAGCTGCGGCGTGTGGGCGCCGTGCCTCTCC
TATTGCGACGGGCTGTTCTGGCTGGTCTATACCGACGTCAAGCGCCTGGACGGCAACTTCAAGGATGCGCACAACTATAT
CGTGACGGCGGAGGCGGTGGAGGCCACCTGGTCCGACCCGGTCTATGTGAACTCGTCGGGTTTCGATCCGTCGCTCTTCC
ACGATGATGACGGCCGCAAGTGGTTTCTCAACATGCAGTGGAATCACCGCACCGAAAGCTTCGGCGGCTCGCCCAAGAGC
CCCGCATTCGACGGTATTCTGCTGCAGGAATGGGACGAGCGGACCCGCAAGCTCGTGGGACCGGTGAAAAACATCTTCGC
CGGCAGTCCGCTCGGCCTTGTCGAAGGTCCGCATCTCTTCAAACGCGACGGCTGGTATTATCTCACGGTCGCGGAGGGAG
GAACCGGTTACGACCACGCCGTTGGAATGGCACGATCCCGTACGATCGATGGCCCCTATGAGATGCACCCGAACGTTCAT
CTCATCACTTCCAAGGATCACCCGGAGGTGGCTCTGCAGCGTGCGGGGCACGGCCAATATGTCGAGACGCCGGACGGGCA
GGCCTATCATACGCATCTATGCGGCCGTCCGCTGCCGCCGCTGCGCCGCTGCACGCTGGGGCGCGAGACAGCGCTGCAGA
AATGCGTCTGGCGGGAGGATGGCTGGCTCTATCTGGAAAATGGCGGTCCGGTGCCGGAGCTAACCGTGCCGGCGCCCGGA
GCCACTGGAACCGTCGCTGAGCGCGTCGTGAACGAAACTGACTTCGACGAGCTGGCGCTTCCACCGGAGTTTCAGTGGCT
GCGTACCCCTGTTCCCTCGCGCATTTTCTCGTTGACCGCCCGGACCGGTCATCTCCGGCTCTTCGGCCGCGAGAGCATCG
GCAGCTGGTTCGAGCAGGCGCTCGTCGCCCGGCGGCAGGAGCATCATTCTTTCCGCGCCGAAACAGTCATCGACTTTGCG
CCCGATACATACCAGCAGGTGGCGGGGCTCACGCATTACTATAACCGGCAAAAGTTTCATGCTCTCGGCATCACACATCA
CGAGACGCTTGGGCGCGTTATCACCATACTCTCCTGTCCGGGGGATTTCCCGAACGGACGGTTGGCGTACCCGATCGGGA
GCGGTGTCGCCTTAGCGGATGGCCCCGTTCAGCTTGCCATGGAGGTGAGGGACAACGATCTCCGGTTCTTCTGGCGGGGA
ACGGCTCAGGCCGAGTGGGCGGCCATCGGTCCTGTGCTCGACGCCGGCGTCATTTCGGACGAAGGCGGCCGCGGCGAGCA
TGGTTCCTTTACCGGTGCGTTTACGGGAATGTTCGCTTTCGACATCTCGGGCAGAGCGATCCCTGCGGACTTCGACCGCT
TCCGGTATCAGGCGCTCACCGTATGA

Upstream 100 bases:

>100_bases
TTCACAATCGCTGCCAAGGCCGGGTTGAAGCGCCTGGCGAAATGTCTTGAAAAGGCGGTGGGTATGGGGCTCGATGCAGC
ACGCGAGGACGGAGACAGAG

Downstream 100 bases:

>100_bases
GATTTCGAAAGCGTATGAGAATTGTCTCATAAGCATTAGTAATCATTACCTAATTGTAATGTCCGTTTTCATATTCGGTT
CAGGAAGGGAGGCCTAGTTT

Product: alpha-N-arabinofuranosidase

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 541; Mature: 540

Protein sequence:

>541_residues
MTATIRNPVLPGFNPDPSICRVGDDYYIATSTFEWYPGVQIHHSRDLVNWRLVRRPLERASQLDMRGNPDSCGVWAPCLS
YCDGLFWLVYTDVKRLDGNFKDAHNYIVTAEAVEATWSDPVYVNSSGFDPSLFHDDDGRKWFLNMQWNHRTESFGGSPKS
PAFDGILLQEWDERTRKLVGPVKNIFAGSPLGLVEGPHLFKRDGWYYLTVAEGGTGYDHAVGMARSRTIDGPYEMHPNVH
LITSKDHPEVALQRAGHGQYVETPDGQAYHTHLCGRPLPPLRRCTLGRETALQKCVWREDGWLYLENGGPVPELTVPAPG
ATGTVAERVVNETDFDELALPPEFQWLRTPVPSRIFSLTARTGHLRLFGRESIGSWFEQALVARRQEHHSFRAETVIDFA
PDTYQQVAGLTHYYNRQKFHALGITHHETLGRVITILSCPGDFPNGRLAYPIGSGVALADGPVQLAMEVRDNDLRFFWRG
TAQAEWAAIGPVLDAGVISDEGGRGEHGSFTGAFTGMFAFDISGRAIPADFDRFRYQALTV

Sequences:

>Translated_541_residues
MTATIRNPVLPGFNPDPSICRVGDDYYIATSTFEWYPGVQIHHSRDLVNWRLVRRPLERASQLDMRGNPDSCGVWAPCLS
YCDGLFWLVYTDVKRLDGNFKDAHNYIVTAEAVEATWSDPVYVNSSGFDPSLFHDDDGRKWFLNMQWNHRTESFGGSPKS
PAFDGILLQEWDERTRKLVGPVKNIFAGSPLGLVEGPHLFKRDGWYYLTVAEGGTGYDHAVGMARSRTIDGPYEMHPNVH
LITSKDHPEVALQRAGHGQYVETPDGQAYHTHLCGRPLPPLRRCTLGRETALQKCVWREDGWLYLENGGPVPELTVPAPG
ATGTVAERVVNETDFDELALPPEFQWLRTPVPSRIFSLTARTGHLRLFGRESIGSWFEQALVARRQEHHSFRAETVIDFA
PDTYQQVAGLTHYYNRQKFHALGITHHETLGRVITILSCPGDFPNGRLAYPIGSGVALADGPVQLAMEVRDNDLRFFWRG
TAQAEWAAIGPVLDAGVISDEGGRGEHGSFTGAFTGMFAFDISGRAIPADFDRFRYQALTV
>Mature_540_residues
TATIRNPVLPGFNPDPSICRVGDDYYIATSTFEWYPGVQIHHSRDLVNWRLVRRPLERASQLDMRGNPDSCGVWAPCLSY
CDGLFWLVYTDVKRLDGNFKDAHNYIVTAEAVEATWSDPVYVNSSGFDPSLFHDDDGRKWFLNMQWNHRTESFGGSPKSP
AFDGILLQEWDERTRKLVGPVKNIFAGSPLGLVEGPHLFKRDGWYYLTVAEGGTGYDHAVGMARSRTIDGPYEMHPNVHL
ITSKDHPEVALQRAGHGQYVETPDGQAYHTHLCGRPLPPLRRCTLGRETALQKCVWREDGWLYLENGGPVPELTVPAPGA
TGTVAERVVNETDFDELALPPEFQWLRTPVPSRIFSLTARTGHLRLFGRESIGSWFEQALVARRQEHHSFRAETVIDFAP
DTYQQVAGLTHYYNRQKFHALGITHHETLGRVITILSCPGDFPNGRLAYPIGSGVALADGPVQLAMEVRDNDLRFFWRGT
AQAEWAAIGPVLDAGVISDEGGRGEHGSFTGAFTGMFAFDISGRAIPADFDRFRYQALTV

Specific function: Unknown

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=549, Percent_Identity=46.0837887067395, Blast_Score=449, Evalue=1e-127,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 60561; Mature: 60429

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATIRNPVLPGFNPDPSICRVGDDYYIATSTFEWYPGVQIHHSRDLVNWRLVRRPLERA
CCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEEEECCCEEEECCCCHHHHHHHHHHHHHH
SQLDMRGNPDSCGVWAPCLSYCDGLFWLVYTDVKRLDGNFKDAHNYIVTAEAVEATWSDP
HHCCCCCCCCCCCHHHHHHHHHCCEEEEEHHHHHHHCCCCCCCCCEEEEEHHHHCCCCCC
VYVNSSGFDPSLFHDDDGRKWFLNMQWNHRTESFGGSPKSPAFDGILLQEWDERTRKLVG
EEECCCCCCCCCEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
PVKNIFAGSPLGLVEGPHLFKRDGWYYLTVAEGGTGYDHAVGMARSRTIDGPYEMHPNVH
HHHHHHCCCCCCCCCCCCEEECCCEEEEEEECCCCCHHHHHCCHHCCCCCCCCEECCCEE
LITSKDHPEVALQRAGHGQYVETPDGQAYHTHLCGRPLPPLRRCTLGRETALQKCVWRED
EEECCCCCHHHHHHCCCCCEEECCCCCEEEEECCCCCCCHHHHHCCCHHHHHHHHHCCCC
GWLYLENGGPVPELTVPAPGATGTVAERVVNETDFDELALPPEFQWLRTPVPSRIFSLTA
CEEEEECCCCCCEEEECCCCCCHHHHHHHHCCCCHHHCCCCCCCHHHCCCCCHHHHEEEE
RTGHLRLFGRESIGSWFEQALVARRQEHHSFRAETVIDFAPDTYQQVAGLTHYYNRQKFH
CCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCEEE
ALGITHHETLGRVITILSCPGDFPNGRLAYPIGSGVALADGPVQLAMEVRDNDLRFFWRG
EECCCHHHHHCCEEEEEECCCCCCCCEEEEECCCCEEEECCCEEEEEEECCCCEEEEEEC
TAQAEWAAIGPVLDAGVISDEGGRGEHGSFTGAFTGMFAFDISGRAIPADFDRFRYQALT
CCCCCCEECCCHHHCCEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHEEEEEC
V
C
>Mature Secondary Structure 
TATIRNPVLPGFNPDPSICRVGDDYYIATSTFEWYPGVQIHHSRDLVNWRLVRRPLERA
CCCCCCCCCCCCCCCCCEEEECCCEEEEEEEEEECCCEEEECCCCHHHHHHHHHHHHHH
SQLDMRGNPDSCGVWAPCLSYCDGLFWLVYTDVKRLDGNFKDAHNYIVTAEAVEATWSDP
HHCCCCCCCCCCCHHHHHHHHHCCEEEEEHHHHHHHCCCCCCCCCEEEEEHHHHCCCCCC
VYVNSSGFDPSLFHDDDGRKWFLNMQWNHRTESFGGSPKSPAFDGILLQEWDERTRKLVG
EEECCCCCCCCCEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
PVKNIFAGSPLGLVEGPHLFKRDGWYYLTVAEGGTGYDHAVGMARSRTIDGPYEMHPNVH
HHHHHHCCCCCCCCCCCCEEECCCEEEEEEECCCCCHHHHHCCHHCCCCCCCCEECCCEE
LITSKDHPEVALQRAGHGQYVETPDGQAYHTHLCGRPLPPLRRCTLGRETALQKCVWRED
EEECCCCCHHHHHHCCCCCEEECCCCCEEEEECCCCCCCHHHHHCCCHHHHHHHHHCCCC
GWLYLENGGPVPELTVPAPGATGTVAERVVNETDFDELALPPEFQWLRTPVPSRIFSLTA
CEEEEECCCCCCEEEECCCCCCHHHHHHHHCCCCHHHCCCCCCCHHHCCCCCHHHHEEEE
RTGHLRLFGRESIGSWFEQALVARRQEHHSFRAETVIDFAPDTYQQVAGLTHYYNRQKFH
CCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCEEE
ALGITHHETLGRVITILSCPGDFPNGRLAYPIGSGVALADGPVQLAMEVRDNDLRFFWRG
EECCCHHHHHCCEEEEEECCCCCCCCEEEEECCCCEEEECCCEEEEEEECCCCEEEEEEC
TAQAEWAAIGPVLDAGVISDEGGRGEHGSFTGAFTGMFAFDISGRAIPADFDRFRYQALT
CCCCCCEECCCHHHCCEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHEEEEEC
V
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]