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The map label for this gene is 150396909

Identifier: 150396909

GI number: 150396909

Start: 1784003

End: 1785292

Strand: Reverse

Name: 150396909

Synonym: Smed_1706

Alternate gene names: NA

Gene position: 1785292-1784003 (Counterclockwise)

Preceding gene: 150396910

Following gene: 150396908

Centisome position: 47.21

GC content: 62.79

Gene sequence:

>1290_bases
ATGACGAGCGCGATTTTATCGCATCCTGCATTGTCGCTAACGATGCAGGGCGGGGATATGCTTCAGGCTGACGAGGTGGT
GGCAATGCTGCGGCTGCACGAGCTTGGTTGGGGTAGCAAACGTCTATCGAAAGAATTTGGATGCGCGCGGAATACCGTTC
GCCGATATCTTCGAGAGGGCGGAGCTGTACCGTTTAAACAGCCTGCCCGGCGCAGTGCGTTCGACGGGCTTGATGATTGG
CTTCGCGAGCGTTTTTTCCGGCATGACGGTAATGCGGATGTGATCCGCCAAGAGTTGGCGAGCGAGCACGGAATTGTCAT
CGGTCTGCGTTCTGTGGAGCTCCGCGTACGGCAGTGGCGGCGAGAGCTAAAGGCACAGAAGCGGGCGACGGTCCGCTTCG
AGACGGCGCCGGGCCATCAGATGCAGATCGACTTCGGTGACACGAAGGTGTGGATCGGCGACGAGCGGGTTCGGATTCAC
CTGTTCGTGGGGACGCTGGGGTATTCGCGGCGGATGCATGCTCGCGCGTCACTCAGGGAGCGCCAGGCAGACTGGTTTGA
AGGCATGGAAGGCGCTTTCCTGCGGTTCGGCGGGGTTCCGGTGGAAGTGCTGATCGACAATGCGAAGGCCCTGGTCGAAC
ATCATGATCCGGTGACGCGAGAGGTGAGATTCAACGCGCGACTGCATGCTTTCGCCCGTTATTGGGGCTTCACGCCGCGG
GCCTGCGCACCGTATCGGGCGAGAACGAAAGGCAAAGACGAGCGCGGGGTCGGTTACGTCAAGAAGAACGCGATCGCCGG
GCGCCGCTTCGAGAGCTGGGCCGAGTTTGAAGCGCATCTGGATCGATGGACACGCGAAGTTGCCGACCAGCGTGAACACG
GCACCACCGGTGTCAAACCGGCGGAACGCTTTGCCGACGAAGCCAGGGAGCTGCGCCCGCTGGCCGGACGGGCACCCTTC
GGGCAATTGCGGGATCTGGTTCGCAAGGTTCAAGCCGATTGCGCGATCGACCTCGACACCAACAGCTACTCGGTGCCCTG
GCGCCTGATCGGCGAGAGTGTTCAGGTCGTGGTGTTGGCGGGGCGCGTCATCATCCGGCATGCGGGCCAGGTGGTGGCTG
ATCATGCCCTGTGCGATGGACGACGACAACGGATCGTGGACCGGGCGCATTTTGTCGGTGTTGCCGGCGCCGAGGGTCTG
GTGCGAGCCGCCGCTCCCATCGAGCTCCCCCCTCCCACCCTGTTGCGCCCGCTTGCGGAATACGAGGCGGTTGCCGGAGG
AGGCTGGTGA

Upstream 100 bases:

>100_bases
CTCGGAAAGGTTACCGGCCTACCCTGTCGGGCGAAATGAAAAACTGACCCCCTAACGAAGCGAAGAACTGACCCCCTCGT
GTCAAAACGAGGAGGAATGG

Downstream 100 bases:

>100_bases
TGACGAACGTGGATCATGACGTGCTGATCGCAACGCTCGATCGGCTGAAGCTGACGGCGATCCGCGACCAGCTCGACACG
TTGCTGGACGAGGCGGCTCG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MTSAILSHPALSLTMQGGDMLQADEVVAMLRLHELGWGSKRLSKEFGCARNTVRRYLREGGAVPFKQPARRSAFDGLDDW
LRERFFRHDGNADVIRQELASEHGIVIGLRSVELRVRQWRRELKAQKRATVRFETAPGHQMQIDFGDTKVWIGDERVRIH
LFVGTLGYSRRMHARASLRERQADWFEGMEGAFLRFGGVPVEVLIDNAKALVEHHDPVTREVRFNARLHAFARYWGFTPR
ACAPYRARTKGKDERGVGYVKKNAIAGRRFESWAEFEAHLDRWTREVADQREHGTTGVKPAERFADEARELRPLAGRAPF
GQLRDLVRKVQADCAIDLDTNSYSVPWRLIGESVQVVVLAGRVIIRHAGQVVADHALCDGRRQRIVDRAHFVGVAGAEGL
VRAAAPIELPPPTLLRPLAEYEAVAGGGW

Sequences:

>Translated_429_residues
MTSAILSHPALSLTMQGGDMLQADEVVAMLRLHELGWGSKRLSKEFGCARNTVRRYLREGGAVPFKQPARRSAFDGLDDW
LRERFFRHDGNADVIRQELASEHGIVIGLRSVELRVRQWRRELKAQKRATVRFETAPGHQMQIDFGDTKVWIGDERVRIH
LFVGTLGYSRRMHARASLRERQADWFEGMEGAFLRFGGVPVEVLIDNAKALVEHHDPVTREVRFNARLHAFARYWGFTPR
ACAPYRARTKGKDERGVGYVKKNAIAGRRFESWAEFEAHLDRWTREVADQREHGTTGVKPAERFADEARELRPLAGRAPF
GQLRDLVRKVQADCAIDLDTNSYSVPWRLIGESVQVVVLAGRVIIRHAGQVVADHALCDGRRQRIVDRAHFVGVAGAEGL
VRAAAPIELPPPTLLRPLAEYEAVAGGGW
>Mature_428_residues
TSAILSHPALSLTMQGGDMLQADEVVAMLRLHELGWGSKRLSKEFGCARNTVRRYLREGGAVPFKQPARRSAFDGLDDWL
RERFFRHDGNADVIRQELASEHGIVIGLRSVELRVRQWRRELKAQKRATVRFETAPGHQMQIDFGDTKVWIGDERVRIHL
FVGTLGYSRRMHARASLRERQADWFEGMEGAFLRFGGVPVEVLIDNAKALVEHHDPVTREVRFNARLHAFARYWGFTPRA
CAPYRARTKGKDERGVGYVKKNAIAGRRFESWAEFEAHLDRWTREVADQREHGTTGVKPAERFADEARELRPLAGRAPFG
QLRDLVRKVQADCAIDLDTNSYSVPWRLIGESVQVVVLAGRVIIRHAGQVVADHALCDGRRQRIVDRAHFVGVAGAEGLV
RAAAPIELPPPTLLRPLAEYEAVAGGGW

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG4584

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR017894
- InterPro:   IPR001584
- InterPro:   IPR006120
- InterPro:   IPR012337 [H]

Pfam domain/function: PF02796 HTH_7; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 48440; Mature: 48309

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSAILSHPALSLTMQGGDMLQADEVVAMLRLHELGWGSKRLSKEFGCARNTVRRYLREG
CCCCHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
GAVPFKQPARRSAFDGLDDWLRERFFRHDGNADVIRQELASEHGIVIGLRSVELRVRQWR
CCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHH
RELKAQKRATVRFETAPGHQMQIDFGDTKVWIGDERVRIHLFVGTLGYSRRMHARASLRE
HHHHHHHHCEEEEECCCCCEEEEEECCEEEEECCCEEEEEEEEECCCCHHHHHHHHHHHH
RQADWFEGMEGAFLRFGGVPVEVLIDNAKALVEHHDPVTREVRFNARLHAFARYWGFTPR
HHHHHHCCCCCCEEEECCCEEEEEECCHHHHHHCCCCCCHHEEHHHHHHHHHHHHCCCCC
ACAPYRARTKGKDERGVGYVKKNAIAGRRFESWAEFEAHLDRWTREVADQREHGTTGVKP
CCCCCCHHCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
AERFADEARELRPLAGRAPFGQLRDLVRKVQADCAIDLDTNSYSVPWRLIGESVQVVVLA
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHCCCCEEEEEH
GRVIIRHAGQVVADHALCDGRRQRIVDRAHFVGVAGAEGLVRAAAPIELPPPTLLRPLAE
HHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHEECCCCCCHHHHCCCCCCCCHHHHHHHHH
YEAVAGGGW
HHHHCCCCC
>Mature Secondary Structure 
TSAILSHPALSLTMQGGDMLQADEVVAMLRLHELGWGSKRLSKEFGCARNTVRRYLREG
CCCHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
GAVPFKQPARRSAFDGLDDWLRERFFRHDGNADVIRQELASEHGIVIGLRSVELRVRQWR
CCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHH
RELKAQKRATVRFETAPGHQMQIDFGDTKVWIGDERVRIHLFVGTLGYSRRMHARASLRE
HHHHHHHHCEEEEECCCCCEEEEEECCEEEEECCCEEEEEEEEECCCCHHHHHHHHHHHH
RQADWFEGMEGAFLRFGGVPVEVLIDNAKALVEHHDPVTREVRFNARLHAFARYWGFTPR
HHHHHHCCCCCCEEEECCCEEEEEECCHHHHHHCCCCCCHHEEHHHHHHHHHHHHCCCCC
ACAPYRARTKGKDERGVGYVKKNAIAGRRFESWAEFEAHLDRWTREVADQREHGTTGVKP
CCCCCCHHCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
AERFADEARELRPLAGRAPFGQLRDLVRKVQADCAIDLDTNSYSVPWRLIGESVQVVVLA
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHCCCCEEEEEH
GRVIIRHAGQVVADHALCDGRRQRIVDRAHFVGVAGAEGLVRAAAPIELPPPTLLRPLAE
HHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHEECCCCCCHHHHCCCCCCCCHHHHHHHHH
YEAVAGGGW
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8382825 [H]