Click here to switch to the map view.

The map label for this gene is yrdA [C]

Identifier: 150396897

GI number: 150396897

Start: 1773342

End: 1773872

Strand: Direct

Name: yrdA [C]

Synonym: Smed_1693

Alternate gene names: 150396897

Gene position: 1773342-1773872 (Clockwise)

Preceding gene: 150396896

Following gene: 150396901

Centisome position: 46.89

GC content: 60.26

Gene sequence:

>531_bases
ATGCCGCTCTACGCTCTAGGACCGCTTAGACCACAGACCCCGACCGAAGGCAGCTATTGGGTCGCACCGGATGCCAATAT
CATCGGGCAGGTCGAGATTGGCGAAGATGTCGGCATCTGGTTCGGCGCGACCCTGCGCGGCGACAACGAGCCGATCCGCA
TCGGCGCTCGCACGAATATTCAGGAATCCGTCGTCGTACACGTTGACCCAGGCTTACCCGTCACCATCGGCGAAGGATGC
ACGATCGGACACCGTGCAATCATTCACGGCTGCACCATAGGCGACAACTCGCTGATCGGCATGGGAGCGACGGTGCTGAA
TGGTGCGAAGATCGGCCGCAATTGCCTCGTTGGTGCCAATGCGCTGGTGACCGAGGGAAAGGAATTTCCCGACAACTCAC
TCATCGTCGGCGCCCCTGCCAAAGTGGTGCGGACCCTGGATGACGCCGCAGTTGAAGGATTGAAGCGCTCGGCCGAACAC
TATGTGAAGAACTGGCAGCGCTACGCTGCCCAGCTCACGCTGCTGGATTGA

Upstream 100 bases:

>100_bases
CGATGGGATCGGCGCGATGTCGGTCACGATCGTTTGAACGGGCGGAACGAAGAGCGCGCTTGATTAAAGGACACAGCCGC
AACTCTGAAAGGACCCTTGC

Downstream 100 bases:

>100_bases
TCCACACTCCGTCCAATTTCCGGAGCCTATATGGCGCAGCTCTTGCACTGACCCCGGATTTCAATCGTCGTCTTCTCCGT
TTTGAACTCCTGCGCACGCG

Product: hexapaptide repeat-containing transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MPLYALGPLRPQTPTEGSYWVAPDANIIGQVEIGEDVGIWFGATLRGDNEPIRIGARTNIQESVVVHVDPGLPVTIGEGC
TIGHRAIIHGCTIGDNSLIGMGATVLNGAKIGRNCLVGANALVTEGKEFPDNSLIVGAPAKVVRTLDDAAVEGLKRSAEH
YVKNWQRYAAQLTLLD

Sequences:

>Translated_176_residues
MPLYALGPLRPQTPTEGSYWVAPDANIIGQVEIGEDVGIWFGATLRGDNEPIRIGARTNIQESVVVHVDPGLPVTIGEGC
TIGHRAIIHGCTIGDNSLIGMGATVLNGAKIGRNCLVGANALVTEGKEFPDNSLIVGAPAKVVRTLDDAAVEGLKRSAEH
YVKNWQRYAAQLTLLD
>Mature_175_residues
PLYALGPLRPQTPTEGSYWVAPDANIIGQVEIGEDVGIWFGATLRGDNEPIRIGARTNIQESVVVHVDPGLPVTIGEGCT
IGHRAIIHGCTIGDNSLIGMGATVLNGAKIGRNCLVGANALVTEGKEFPDNSLIVGAPAKVVRTLDDAAVEGLKRSAEHY
VKNWQRYAAQLTLLD

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=175, Percent_Identity=40.5714285714286, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1787667, Length=161, Percent_Identity=42.2360248447205, Blast_Score=118, Evalue=2e-28,
Organism=Escherichia coli, GI87081681, Length=162, Percent_Identity=35.1851851851852, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18649; Mature: 18517

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLYALGPLRPQTPTEGSYWVAPDANIIGQVEIGEDVGIWFGATLRGDNEPIRIGARTNI
CCEECCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCEEECCCCCC
QESVVVHVDPGLPVTIGEGCTIGHRAIIHGCTIGDNSLIGMGATVLNGAKIGRNCLVGAN
CCEEEEEECCCCCEEECCCCCCCCEEEEEEEECCCCCEEECCHHEECCCCCCCEEEECCC
ALVTEGKEFPDNSLIVGAPAKVVRTLDDAAVEGLKRSAEHYVKNWQRYAAQLTLLD
EEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
>Mature Secondary Structure 
PLYALGPLRPQTPTEGSYWVAPDANIIGQVEIGEDVGIWFGATLRGDNEPIRIGARTNI
CEECCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCEEECCCCCC
QESVVVHVDPGLPVTIGEGCTIGHRAIIHGCTIGDNSLIGMGATVLNGAKIGRNCLVGAN
CCEEEEEECCCCCEEECCCCCCCCEEEEEEEECCCCCEEECCHHEECCCCCCCEEEECCC
ALVTEGKEFPDNSLIVGAPAKVVRTLDDAAVEGLKRSAEHYVKNWQRYAAQLTLLD
EEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]