Click here to switch to the map view.

The map label for this gene is ybeQ [H]

Identifier: 150396795

GI number: 150396795

Start: 1682346

End: 1683488

Strand: Reverse

Name: ybeQ [H]

Synonym: Smed_1586

Alternate gene names: 150396795

Gene position: 1683488-1682346 (Counterclockwise)

Preceding gene: 150396796

Following gene: 150396790

Centisome position: 44.51

GC content: 61.59

Gene sequence:

>1143_bases
ATGAAGTCAATTGGCACCAGTTTGATTGTTGCCCTTTCGCTCATGGCTGCAATGCCGATACGAGCCGGCGCCCAAGATCC
CGCGTCCTCTTTTGACGCGAGGGCGGCGCAGGCGGTCCGCGACGACCCGCAAGCACAGTTCGTTCTCGGTTCGATGTACT
ACAAGGGCAGCAGCGGGACACGGCGCGACCATGCCATGGCAGCATACTGGTACCGCAAGGCCGCTGAACAGGGGCATGTC
AAGGCGCAAGTTAATCTGGGCGGCTTGTATTTCGACGGCGAGGGCGTGGCGCAGGATTATGCCGAAGCGGCGCGGTGGTT
TCGCAAGGCGGCCGAGGATGGCGCCGCCGCTTTGGCCGAGCTCAATCTCGGCGTGATGTACGAGCACGGAAGAGGTGTCG
CGCCGGATCCGGCCGAGGCCGCGCGCTGGTACGGAAGGGCGGCCGAGCATGGGGATGCGCAGGCGCAACACCGACTTGGT
CTCATGTACTTCAAAGGCGAAGGAGTGAAACGGGATCACGTGCAAGCAGCGCGCTGGTATCGCGCGGCGGCCGCGCAAGG
CAACCCTTCCGCCCAGTTCCATCTCGGAAGCATGTATTTGCAGGGTCAGGGCGTGCCGAAGGAACCGTCAGAAGCGTTTC
GTCTGTTCCGGGGCGCGGGCGGGCTCGGGCATGAAAACGCTCAGTACAATCTGGGCTTGATGTATCTGAATGGCATCGGT
GTGCAAAAGGATCTTGATGAATCCGTGCGCTGGTTTCGCGCCGCGGCCGAACAGAAATCGGCGCTTGGTCAGTACAATCT
CGCACTGATGTACGCGAACGGCACCGGTGTTGCCAAAAATTCAGAAGAGGCGGCTCGCTTGACGAGTCTCGCGGCCCATC
AGGGATTGGCAATGGCGCAGCACAATCTCGGCATCGCCTATATCAGCGGTGCGGGCGTGGAAAAGGACTCTGCAGCGGCC
GTGCATTGGTTTCAGAAGGCGGCGCAGCAGGGTCATGCCAGGGCTCAGTTCAATCTGGCAATGATGTATGCACGGGGTGA
GGGCGTGGCCAGGAACGATGCGCTCGCGTTCGAGTGGATGCAGAAGGCGGCAAATCAGCTGCCGGAGGCGCGGCAGTACC
TCGATCGCACGCGCAAGGAATGA

Upstream 100 bases:

>100_bases
CAATCGGGGTCGGGAAACCGGCCCCGTTTATTTTTCGTGACGAATCAATCTTGAGTTGTGTAAATTATCCAACCTGATGC
TGCGCTCGGTTGGAGGGATG

Downstream 100 bases:

>100_bases
GCTAGACTAGAGCAATTCCAGGAAAAGTGCGTAGCGGTTTTCCGTCCGGAAATTGCGTCAAAAAAAAATGGGTTAGAGAG
TTTCCGCGATTCGGAGAAAA

Product: Sel1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MKSIGTSLIVALSLMAAMPIRAGAQDPASSFDARAAQAVRDDPQAQFVLGSMYYKGSSGTRRDHAMAAYWYRKAAEQGHV
KAQVNLGGLYFDGEGVAQDYAEAARWFRKAAEDGAAALAELNLGVMYEHGRGVAPDPAEAARWYGRAAEHGDAQAQHRLG
LMYFKGEGVKRDHVQAARWYRAAAAQGNPSAQFHLGSMYLQGQGVPKEPSEAFRLFRGAGGLGHENAQYNLGLMYLNGIG
VQKDLDESVRWFRAAAEQKSALGQYNLALMYANGTGVAKNSEEAARLTSLAAHQGLAMAQHNLGIAYISGAGVEKDSAAA
VHWFQKAAQQGHARAQFNLAMMYARGEGVARNDALAFEWMQKAANQLPEARQYLDRTRKE

Sequences:

>Translated_380_residues
MKSIGTSLIVALSLMAAMPIRAGAQDPASSFDARAAQAVRDDPQAQFVLGSMYYKGSSGTRRDHAMAAYWYRKAAEQGHV
KAQVNLGGLYFDGEGVAQDYAEAARWFRKAAEDGAAALAELNLGVMYEHGRGVAPDPAEAARWYGRAAEHGDAQAQHRLG
LMYFKGEGVKRDHVQAARWYRAAAAQGNPSAQFHLGSMYLQGQGVPKEPSEAFRLFRGAGGLGHENAQYNLGLMYLNGIG
VQKDLDESVRWFRAAAEQKSALGQYNLALMYANGTGVAKNSEEAARLTSLAAHQGLAMAQHNLGIAYISGAGVEKDSAAA
VHWFQKAAQQGHARAQFNLAMMYARGEGVARNDALAFEWMQKAANQLPEARQYLDRTRKE
>Mature_380_residues
MKSIGTSLIVALSLMAAMPIRAGAQDPASSFDARAAQAVRDDPQAQFVLGSMYYKGSSGTRRDHAMAAYWYRKAAEQGHV
KAQVNLGGLYFDGEGVAQDYAEAARWFRKAAEDGAAALAELNLGVMYEHGRGVAPDPAEAARWYGRAAEHGDAQAQHRLG
LMYFKGEGVKRDHVQAARWYRAAAAQGNPSAQFHLGSMYLQGQGVPKEPSEAFRLFRGAGGLGHENAQYNLGLMYLNGIG
VQKDLDESVRWFRAAAEQKSALGQYNLALMYANGTGVAKNSEEAARLTSLAAHQGLAMAQHNLGIAYISGAGVEKDSAAA
VHWFQKAAQQGHARAQFNLAMMYARGEGVARNDALAFEWMQKAANQLPEARQYLDRTRKE

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI151301150, Length=340, Percent_Identity=33.5294117647059, Blast_Score=148, Evalue=6e-36,
Organism=Homo sapiens, GI19923669, Length=339, Percent_Identity=30.0884955752212, Blast_Score=122, Evalue=4e-28,
Organism=Homo sapiens, GI33620759, Length=278, Percent_Identity=30.2158273381295, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI217330658, Length=195, Percent_Identity=30.2564102564103, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI217330656, Length=195, Percent_Identity=30.2564102564103, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI154689719, Length=240, Percent_Identity=28.75, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI87081769, Length=302, Percent_Identity=35.0993377483444, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI1786867, Length=113, Percent_Identity=40.7079646017699, Blast_Score=86, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17563256, Length=339, Percent_Identity=30.0884955752212, Blast_Score=114, Evalue=8e-26,
Organism=Saccharomyces cerevisiae, GI6319410, Length=243, Percent_Identity=29.2181069958848, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355295, Length=305, Percent_Identity=32.7868852459016, Blast_Score=128, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 41219; Mature: 41219

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIGTSLIVALSLMAAMPIRAGAQDPASSFDARAAQAVRDDPQAQFVLGSMYYKGSSGT
CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCC
RRDHAMAAYWYRKAAEQGHVKAQVNLGGLYFDGEGVAQDYAEAARWFRKAAEDGAAALAE
CHHHHHHHHHHHHHHHCCCEEEEEEECEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LNLGVMYEHGRGVAPDPAEAARWYGRAAEHGDAQAQHRLGLMYFKGEGVKRDHVQAARWY
CCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHCEEEEEEECCCCCHHHHHHHHHH
RAAAAQGNPSAQFHLGSMYLQGQGVPKEPSEAFRLFRGAGGLGHENAQYNLGLMYLNGIG
HHHHCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCC
VQKDLDESVRWFRAAAEQKSALGQYNLALMYANGTGVAKNSEEAARLTSLAAHQGLAMAQ
CCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCHHHHH
HNLGIAYISGAGVEKDSAAAVHWFQKAAQQGHARAQFNLAMMYARGEGVARNDALAFEWM
CCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCHHHHHHH
QKAANQLPEARQYLDRTRKE
HHHHHHCHHHHHHHHHHCCC
>Mature Secondary Structure
MKSIGTSLIVALSLMAAMPIRAGAQDPASSFDARAAQAVRDDPQAQFVLGSMYYKGSSGT
CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCC
RRDHAMAAYWYRKAAEQGHVKAQVNLGGLYFDGEGVAQDYAEAARWFRKAAEDGAAALAE
CHHHHHHHHHHHHHHHCCCEEEEEEECEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LNLGVMYEHGRGVAPDPAEAARWYGRAAEHGDAQAQHRLGLMYFKGEGVKRDHVQAARWY
CCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHCEEEEEEECCCCCHHHHHHHHHH
RAAAAQGNPSAQFHLGSMYLQGQGVPKEPSEAFRLFRGAGGLGHENAQYNLGLMYLNGIG
HHHHCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCC
VQKDLDESVRWFRAAAEQKSALGQYNLALMYANGTGVAKNSEEAARLTSLAAHQGLAMAQ
CCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCHHHHH
HNLGIAYISGAGVEKDSAAAVHWFQKAAQQGHARAQFNLAMMYARGEGVARNDALAFEWM
CCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCHHHHHHH
QKAANQLPEARQYLDRTRKE
HHHHHHCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]