| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150396787
Identifier: 150396787
GI number: 150396787
Start: 1676793
End: 1677710
Strand: Reverse
Name: 150396787
Synonym: Smed_1578
Alternate gene names: NA
Gene position: 1677710-1676793 (Counterclockwise)
Preceding gene: 150396789
Following gene: 150396786
Centisome position: 44.36
GC content: 64.27
Gene sequence:
>918_bases ATGGCATCCTTTGCGATCAAGGTCATCCGTCTATCGTTAAAGGCCGTCGCCGCGGTCTCGGCTGAAAAGGCGGGCGAGGC CGCATTCTGGATATTCTGCCGCACCCCGGGCCGTAAGCCGAAAAGCGCCAAGGAGACGGCTCTGCTCGAGGCGGCAGCGC CCGTCATGCAGGGATCGCGGAAGGTGACTTTGTCCTTTGGAGGCGGCTGGGTCGCCGCTCGCCATTTCGAACGACGTTCG AGTCCCCGCCATCAGCGGATACTGCTCGTGCATGGTTGGGGTTCGCGAAGCGAATATCTGGCGACCTTGATCGATCGCCT GCTCTCCTCGGGCGCGGAGGTCGTCGCGCTCGACCTGCCCGGCCATGGAGCGTCGCCCGGCCGAACATTGACCATGCCGC AGGCGGTCCGGGCAATCGATGCGGCCTGGCGCCACTTCGACGGCTTCGATGCCGCTATCGGTCATTCATTCGGCGGCGCA AGCCTTGCCTGCGCGGCAGGGGCGGTTCTTTGCGATGTGCCTGCGCGCGTTTCGGGGAAGCTGGTGCTAATCGGCGCTCC GAGCGAAATGACTTGGCTCTTCAAGGGTTTCGGCCGGGCACTCGGGCTCAAGCCGAAGGCTCAGGCGGCTTTCGAGGGCA TGGTGGAGCGGCTCTCCGGACGGCGCATCGACGGATTTGATGCAGCACGCATTCTCGCGGCGGTCCGCAAGCCGGTCCTG GTCATCCATGCCGAGGAGGATAAGGAAGTTCCTGCCGATCATGCGCGCCGCTATGCGGCCGCAGGCTCCAACGTGGAACT GCACTGGGCGAACGGTCTGGGGCATCGCCGCATTGTCTCCGCCGCTGCGGTTGTCGAGAGGGTCGCCGATTTTCTCCGGG AGGAGGGGAAAGCGATTCCCATGTCAAAAATCGCCTGA
Upstream 100 bases:
>100_bases CGCGGATGATCCCAGGGGAAGTGGTGGTTTTCGATGGGCACTTGCATTTTGTTCATCGTTGTACAAATATGTTCAGTGTT GAACATTAGAGGGCCCCACT
Downstream 100 bases:
>100_bases TGGCGTCATCAGACCGTCATGCTATTCCTCGACACGTGCGCGTAGAAATGACGCTTGGGCGTAGCGGCGGCGTCATTGGC AGGAGGGATGAAAATGACGA
Product: hypothetical protein
Products: NA
Alternate protein names: Hydrolase Protein; Alpha/Beta Superfamily Hydrolase/Acyltransferase; Alpha/Beta Hydrolase Fold Protein; Lysophospholipase; Hydrolase Or Acyltransferase
Number of amino acids: Translated: 305; Mature: 304
Protein sequence:
>305_residues MASFAIKVIRLSLKAVAAVSAEKAGEAAFWIFCRTPGRKPKSAKETALLEAAAPVMQGSRKVTLSFGGGWVAARHFERRS SPRHQRILLVHGWGSRSEYLATLIDRLLSSGAEVVALDLPGHGASPGRTLTMPQAVRAIDAAWRHFDGFDAAIGHSFGGA SLACAAGAVLCDVPARVSGKLVLIGAPSEMTWLFKGFGRALGLKPKAQAAFEGMVERLSGRRIDGFDAARILAAVRKPVL VIHAEEDKEVPADHARRYAAAGSNVELHWANGLGHRRIVSAAAVVERVADFLREEGKAIPMSKIA
Sequences:
>Translated_305_residues MASFAIKVIRLSLKAVAAVSAEKAGEAAFWIFCRTPGRKPKSAKETALLEAAAPVMQGSRKVTLSFGGGWVAARHFERRS SPRHQRILLVHGWGSRSEYLATLIDRLLSSGAEVVALDLPGHGASPGRTLTMPQAVRAIDAAWRHFDGFDAAIGHSFGGA SLACAAGAVLCDVPARVSGKLVLIGAPSEMTWLFKGFGRALGLKPKAQAAFEGMVERLSGRRIDGFDAARILAAVRKPVL VIHAEEDKEVPADHARRYAAAGSNVELHWANGLGHRRIVSAAAVVERVADFLREEGKAIPMSKIA >Mature_304_residues ASFAIKVIRLSLKAVAAVSAEKAGEAAFWIFCRTPGRKPKSAKETALLEAAAPVMQGSRKVTLSFGGGWVAARHFERRSS PRHQRILLVHGWGSRSEYLATLIDRLLSSGAEVVALDLPGHGASPGRTLTMPQAVRAIDAAWRHFDGFDAAIGHSFGGAS LACAAGAVLCDVPARVSGKLVLIGAPSEMTWLFKGFGRALGLKPKAQAAFEGMVERLSGRRIDGFDAARILAAVRKPVLV IHAEEDKEVPADHARRYAAAGSNVELHWANGLGHRRIVSAAAVVERVADFLREEGKAIPMSKIA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32495; Mature: 32364
Theoretical pI: Translated: 10.83; Mature: 10.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASFAIKVIRLSLKAVAAVSAEKAGEAAFWIFCRTPGRKPKSAKETALLEAAAPVMQGSR CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCE KVTLSFGGGWVAARHFERRSSPRHQRILLVHGWGSRSEYLATLIDRLLSSGAEVVALDLP EEEEEECCCCHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECC GHGASPGRTLTMPQAVRAIDAAWRHFDGFDAAIGHSFGGASLACAAGAVLCDVPARVSGK CCCCCCCCEEEHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHCCHHEECCCCCCCCE LVLIGAPSEMTWLFKGFGRALGLKPKAQAAFEGMVERLSGRRIDGFDAARILAAVRKPVL EEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEE VIHAEEDKEVPADHARRYAAAGSNVELHWANGLGHRRIVSAAAVVERVADFLREEGKAIP EEECCCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC MSKIA HHHCC >Mature Secondary Structure ASFAIKVIRLSLKAVAAVSAEKAGEAAFWIFCRTPGRKPKSAKETALLEAAAPVMQGSR CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCE KVTLSFGGGWVAARHFERRSSPRHQRILLVHGWGSRSEYLATLIDRLLSSGAEVVALDLP EEEEEECCCCHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECC GHGASPGRTLTMPQAVRAIDAAWRHFDGFDAAIGHSFGGASLACAAGAVLCDVPARVSGK CCCCCCCCEEEHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHCCHHEECCCCCCCCE LVLIGAPSEMTWLFKGFGRALGLKPKAQAAFEGMVERLSGRRIDGFDAARILAAVRKPVL EEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEE VIHAEEDKEVPADHARRYAAAGSNVELHWANGLGHRRIVSAAAVVERVADFLREEGKAIP EEECCCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC MSKIA HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA